Factsheet for Zm00001d034990_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	extracellular, mitochondrion, plasma membrane
MultiLoc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24195	Sorghum	endoplasmic reticulum, extracellular, plasma membrane, plastid	89.05	88.33
TraesCS7A01G323800.3	Wheat	plastid	78.7	80.0
TraesCS7B01G224700.1	Wheat	plastid	78.09	79.38
TraesCS7D01G320900.1	Wheat	plastid	77.89	79.18
Os08t0107300-00	Rice	extracellular, mitochondrion	76.67	78.42
Zm00001d021964_P001	Maize	cytosol	24.75	72.62
HORVU7Hr1G077560.12	Barley	plastid	64.71	66.05
GSMUA_Achr2P08050_001	Banana	cytosol, extracellular, golgi, mitochondrion	54.56	60.86
CDX75352	Canola	extracellular	57.81	60.38
Bra011440.1-P	Field mustard	extracellular	58.01	60.34
CDX68976	Canola	extracellular	57.4	60.08
CDY46115	Canola	extracellular	56.59	58.99
KRH53903	Soybean	extracellular, plasma membrane, plastid	57.0	58.91
AT4G33440.1	Thale cress	extracellular	56.39	58.53
Bra037005.1-P	Field mustard	extracellular	56.59	58.49
CDX72404	Canola	extracellular	55.98	58.35
VIT_04s0044g01420.t01	Wine grape	extracellular, golgi, vacuole	57.0	54.35
PGSC0003DMT400030711	Potato	extracellular, golgi, nucleus	53.55	54.32
Solyc06g060170.2.1	Tomato	cytosol, golgi, plasma membrane	53.75	54.3
Zm00001d053395_P001	Maize	extracellular	43.0	47.01
Zm00001d009717_P001	Maize	extracellular	41.99	46.41
Zm00001d011369_P001	Maize	extracellular	41.58	46.07
Zm00001d018548_P001	Maize	cytosol	21.5	45.69
Zm00001d027441_P001	Maize	plasma membrane	42.6	45.36
Zm00001d010681_P001	Maize	cytosol	25.76	44.88
Zm00001d035899_P001	Maize	extracellular	43.81	44.44
Zm00001d019282_P001	Maize	mitochondrion	45.23	43.9
Zm00001d023813_P001	Maize	extracellular, vacuole	40.57	43.38
Zm00001d034727_P003	Maize	plastid	43.41	41.72
Zm00001d048696_P001	Maize	extracellular	41.18	41.09
Zm00001d020615_P001	Maize	plastid	41.38	39.53
Zm00001d052103_P001	Maize	plasma membrane	38.95	38.79
Zm00001d020931_P001	Maize	extracellular	21.3	22.58

Protein Annotations

EntrezGene:100281863	Gene3D:2.160.20.10	MapMan:50.3.2	ProteinID:AQK78037.1	UniProt:B6SZN5	EMBL:BT055816
EMBL:EU958200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	GO:GO:0016829	InterPro:Glyco_hydro_28	InterPro:IPR012334
PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF4	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126
UniParc:UPI000182CCDA	EnsemblPlantsGene:Zm00001d034990	EnsemblPlants:Zm00001d034990_P001	EnsemblPlants:Zm00001d034990_T001	SEG:seg	:

Description

Pectin lyase-like superfamily protein

Coordinates

chr6:-:1282754..1285886

Molecular Weight (calculated)

53180.2 Da

IEP (calculated)

6.452

GRAVY (calculated)

-0.095

Length

493 amino acids

Sequence
(BLAST)

001: MAARAKAAAV DDHDPMPPPL PLPWPRPAPL LVMLSLLATA SYLALTRFPA ALLPIAPRSR PHDAPAHAPG DSCAGFYAGA GPAREVWASV EEFGAVGDGA
101: TLNTAAFRRA VAELGARAVG GGGARLDVPP GRWLTGSFNL TSRFTLFLHR GAVILGSQDP EEWPLITPLP SYGRGRERLG PRHISLIHGE GLNDVVITGS
201: NGTIDGQGHM WWELWRNRTL NHTRGHLIEL VNSTNVLISS VTLSNSPFWT VHPVYCSNVV MKDLTILAPL DAPNTDGIDP DSSSEVCIED CYIESGDDLV
301: AVKSGWDQYG ISFGKPSTNI VIQRVSGTTP TCSGVGFGSE MSGGISNVLV RDLHVWNSAQ AVRLKTDVGR GGYITNITIA SVAMEKVKVP IRFSRGADDH
401: PDDRYDPAAL PRISNVLVSD VVGVHLQRAP MLEAVPGAVY EGICFRNFSF RGIRRQQDSR WHCESVYGEA HDVFPAPCEE FRRDGSSSWC GLL

Best Arabidopsis Sequence Match ( AT4G33440.1 )
(BLAST)

001: MEPEKNPTTV LSAITRPSWA FLLLVFTVLA ILSLQISSNS FLPLWIPTSQ YDDPVTCSGF FNHDPFPNRI VMSITDFGGV GDGKTSNTAA FRRAVRHLEG
101: FAAEGGAQLN VPEGTWLSGS FNLTSNFTLF LERGALILGS KDLDEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI TGENGTIDGQ GKMWWELWWN
201: RTLVHTRGHL IELKNSHNIL ISNLTLLNSP FWTIHPVYCS NVVIRNMTIL APMNAPNTDG IDPDSSTNVC IEDCYIESGD DLVAVKSGWD QYGMAVARPS
301: SNIVIRRISG TTRTCSGVGI GSEMSGGIFN ITVEDIHVWD SAAGLRIKTD KGRGGYISNI TFNNVLLEKV KVPIRFSSGS NDHSDDKWDP KALPRVKGIY
401: ISNVVSLNSR KAPMLLGVEG TSFQDVCLRN VTLLGLPKTE KWKCKDVSGY ASDVFPLSCP QLLQKKGSIA QCSYR

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84K13]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.