Factsheet for Solyc06g060170.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, cytosol

Predictor Summary:

plastid 2
plasma membrane 2
mitochondrion 1
cytosol 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030711	Potato	extracellular, golgi, nucleus	97.13	97.53
CDX75352	Canola	extracellular	64.34	66.53
Bra011440.1-P	Field mustard	extracellular	64.14	66.03
CDX68976	Canola	extracellular	63.52	65.82
AT4G33440.1	Thale cress	extracellular	63.93	65.68
CDY46115	Canola	extracellular	63.52	65.54
CDX72404	Canola	extracellular	63.32	65.33
Bra037005.1-P	Field mustard	extracellular	63.32	64.78
KRH53903	Soybean	extracellular, plasma membrane, plastid	62.5	63.94
VIT_04s0044g01420.t01	Wine grape	extracellular, golgi, vacuole	65.78	62.09
GSMUA_Achr2P08050_001	Banana	cytosol, extracellular, golgi, mitochondrion	52.87	58.37
Os08t0107300-00	Rice	extracellular, mitochondrion	55.94	56.64
TraesCS7D01G320900.1	Wheat	plastid	56.15	56.49
TraesCS7A01G323800.3	Wheat	plastid	56.15	56.49
TraesCS7B01G224700.1	Wheat	plastid	55.33	55.67
KXG24195	Sorghum	endoplasmic reticulum, extracellular, plasma membrane, plastid	55.74	54.73
Zm00001d034990_P001	Maize	plasma membrane	54.3	53.75
Zm00001d021964_P001	Maize	cytosol	16.39	47.62
HORVU7Hr1G077560.12	Barley	plastid	46.72	47.2
Solyc08g082170.2.1	Tomato	nucleus	44.47	46.47
Solyc01g094970.2.1	Tomato	extracellular	38.73	46.44
Solyc06g009790.2.1	Tomato	extracellular	40.37	43.11
Solyc08g081480.2.1	Tomato	extracellular	41.8	42.24
Solyc09g075460.2.1	Tomato	extracellular	40.98	41.67
Solyc12g009210.1.1	Tomato	nucleus	41.39	40.81
Solyc05g049980.2.1	Tomato	extracellular	40.57	40.74
Solyc07g042160.2.1	Tomato	nucleus	40.98	40.49
Solyc03g007950.2.1	Tomato	extracellular	38.32	40.04
Solyc03g117750.2.1	Tomato	extracellular, golgi	39.96	40.04
Solyc06g030520.1.1	Tomato	cytosol	5.94	25.44
Solyc03g051770.2.1	Tomato	cytosol	12.7	19.68

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28
InterPro:IPR012334	UniProt:K4C6J8	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF4	InterPro:PbH1
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	EnsemblPlantsGene:Solyc06g060170.2	EnsemblPlants:Solyc06g060170.2.1
TMHMM:TMhelix	UniParc:UPI0002765F6E	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:38129432..38135309

Molecular Weight (calculated)

53941.0 Da

IEP (calculated)

8.469

GRAVY (calculated)

-0.098

Length

488 amino acids

Sequence
(BLAST)

001: MEEQTPILNL NLNRIKGGGG GIRRPLWVSV LVLFTVIALF SLHINKEYSI FSIPLDFISG RVGLVSSYQQ KSCSDFFKQV PARKVVKSIS DFGGIGDGKT
101: SNTKAFHRAM EFMSRFTESG GSQLVVPKGR WLTGSFNLTS NFTLFLEYGA VILGSQDPDE WPIIDALPSY GRGRERLGAR HISLIHGNGL TNVVITGENG
201: TVDGQGKMWW DLWWNRTLVH TRGHLVELIN SQNILIQNLT LMNSPFWTIH PVYCRNIVIR NMTILAPLNA PNTDGIDADS SLNVCIEDCY IESGDDLISV
301: KSGWDQYGMK MARPSSNIIV RRVKGTTPTC SGVGIGSEMS GGVSNVLIED LYVRDSAAGV RIKTDIGRGG YIVNITINNM RTERVKVPIR FSRGANDHPD
401: EKWDPKALPK VRGIFISNVV SLESKRPPLL VGIEEAPFED IHMKNISLFG LAPSMKWNCE YISGSSCSVF PAPCSQLLKN ESTIQCPN

Best Arabidopsis Sequence Match ( AT4G33440.1 )
(BLAST)

001: MEPEKNPTTV LSAITRPSWA FLLLVFTVLA ILSLQISSNS FLPLWIPTSQ YDDPVTCSGF FNHDPFPNRI VMSITDFGGV GDGKTSNTAA FRRAVRHLEG
101: FAAEGGAQLN VPEGTWLSGS FNLTSNFTLF LERGALILGS KDLDEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI TGENGTIDGQ GKMWWELWWN
201: RTLVHTRGHL IELKNSHNIL ISNLTLLNSP FWTIHPVYCS NVVIRNMTIL APMNAPNTDG IDPDSSTNVC IEDCYIESGD DLVAVKSGWD QYGMAVARPS
301: SNIVIRRISG TTRTCSGVGI GSEMSGGIFN ITVEDIHVWD SAAGLRIKTD KGRGGYISNI TFNNVLLEKV KVPIRFSSGS NDHSDDKWDP KALPRVKGIY
401: ISNVVSLNSR KAPMLLGVEG TSFQDVCLRN VTLLGLPKTE KWKCKDVSGY ASDVFPLSCP QLLQKKGSIA QCSYR

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84K13]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.