Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400031687 | Potato | extracellular | 92.08 | 96.2 |
| VIT_02s0025g01330.t01 | Wine grape | extracellular | 73.45 | 76.73 |
| KRG99037 | Soybean | nucleus | 71.52 | 75.57 |
| KRH45957 | Soybean | extracellular | 71.31 | 75.17 |
| KRH14547 | Soybean | extracellular | 70.02 | 73.32 |
| GSMUA_Achr6P14280_001 | Banana | cytosol | 60.81 | 70.65 |
| GSMUA_Achr8P19900_001 | Banana | cytosol | 62.53 | 70.36 |
| KRH73576 | Soybean | extracellular | 41.54 | 70.29 |
| AT4G23820.1 | Thale cress | extracellular, vacuole | 66.81 | 70.27 |
| GSMUA_Achr10P... | Banana | cytosol | 61.88 | 70.15 |
| CDY47619 | Canola | extracellular, vacuole | 66.6 | 70.05 |
| Bra013734.1-P | Field mustard | extracellular, vacuole | 66.6 | 70.05 |
| CDY03516 | Canola | extracellular, vacuole | 66.38 | 69.82 |
| CDY10970 | Canola | extracellular, vacuole | 65.74 | 68.07 |
| CDX94222 | Canola | extracellular | 65.74 | 68.07 |
| Bra019264.1-P | Field mustard | extracellular, vacuole | 65.52 | 67.85 |
| Os01t0618900-01 | Rice | cytosol, extracellular | 47.54 | 67.48 |
| GSMUA_Achr4P08470_001 | Banana | extracellular | 59.1 | 67.15 |
| Os02t0256100-01 | Rice | extracellular | 61.24 | 64.56 |
| EES20030 | Sorghum | extracellular | 60.6 | 64.46 |
| Bra028511.1-P | Field mustard | extracellular | 61.67 | 64.43 |
| AT5G41870.1 | Thale cress | extracellular | 61.88 | 64.37 |
| CDX67513 | Canola | extracellular | 61.46 | 64.21 |
| CDY13383 | Canola | extracellular | 60.6 | 63.6 |
| GSMUA_Achr4P15650_001 | Banana | extracellular, plasma membrane, vacuole | 55.25 | 63.55 |
| TraesCS3B01G253000.1 | Wheat | extracellular | 61.03 | 63.33 |
| Os05t0587000-01 | Rice | extracellular | 60.39 | 62.95 |
| EES01085 | Sorghum | extracellular | 59.96 | 62.64 |
| TraesCS3D01G230000.1 | Wheat | extracellular | 60.17 | 62.44 |
| EES04867 | Sorghum | extracellular, plasma membrane | 59.53 | 62.05 |
| Zm00001d009717_P001 | Maize | extracellular | 58.24 | 60.99 |
| Zm00001d053395_P001 | Maize | extracellular | 58.46 | 60.53 |
| Zm00001d011369_P001 | Maize | extracellular | 55.67 | 58.43 |
| HORVU3Hr1G054810.4 | Barley | extracellular | 60.17 | 51.94 |
| Solyc01g094970.2.1 | Tomato | extracellular | 41.33 | 47.42 |
| Solyc06g009790.2.1 | Tomato | extracellular | 45.82 | 46.83 |
| Solyc06g060170.2.1 | Tomato | cytosol, golgi, plasma membrane | 46.47 | 44.47 |
| Solyc08g081480.2.1 | Tomato | extracellular | 44.54 | 43.06 |
| Solyc09g075460.2.1 | Tomato | extracellular | 44.11 | 42.92 |
| Solyc03g117750.2.1 | Tomato | extracellular, golgi | 43.9 | 42.09 |
| Solyc05g049980.2.1 | Tomato | extracellular | 43.68 | 41.98 |
| Solyc12g009210.1.1 | Tomato | nucleus | 43.68 | 41.21 |
| Solyc03g007950.2.1 | Tomato | extracellular | 40.69 | 40.69 |
| Solyc07g042160.2.1 | Tomato | nucleus | 42.83 | 40.49 |
| Solyc06g030520.1.1 | Tomato | cytosol | 4.93 | 20.18 |
| Solyc03g051770.2.1 | Tomato | cytosol | 13.49 | 20.0 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 |
| GO:GO:0005576 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016787 | GO:GO:0016798 | GO:GO:0016829 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 |
| UniProt:K4CPL3 | PFAM:PF00295 | PANTHER:PTHR31339 | PANTHER:PTHR31339:SF3 | InterPro:PbH1 | InterPro:Pectin_lyas_fold |
| InterPro:Pectin_lyase_fold/virulence | SMART:SM00710 | SUPFAM:SSF51126 | SignalP:SignalP-noTM | EnsemblPlantsGene:Solyc08g082170.2 | EnsemblPlants:Solyc08g082170.2.1 |
| TMHMM:TMhelix | UniParc:UPI000276C4C3 | : | : | : | : |
Description
No Description!
Coordinates
chr8:-:65030569..65036288
Molecular Weight (calculated)
50973.5 Da
IEP (calculated)
8.225
GRAVY (calculated)
-0.031
Length
467 amino acids
Sequence
(BLAST)
(BLAST)
001: MNRWVGSIFL CIISTLLLTS WLVAAEGETC SGIVPMQYRN DKISILDFGG VGDGRTLNTK AFKEAIFRIQ HLKRKGGTLL YIPAGVYLTG PFDLTSRMTL
101: YLARGAVIKA TQDPSQWPLV DPLPSYGRGR ERPGARYMSL LHGDGLHDVI ITGENGTIDG QGDVWWNMWR QRTLQFTRPH LVELMNSRGI LISNVIFKNS
201: PFWNIHPVYC SNVVIRYVTI LAPADSPNTD GIDPDSSSNV CIEDSYISVG DDLVAVKSGW DQYGIAYGRP SHGITIRRIT GSSPFAGIAV GSETSGGVVD
301: VLAEHISLFN MGVGIHIKTN VGRGGMIRNI TVSNVYMENA RTGIKIAGDV GDHPDENFNP NALPVVKGIK IKDVWGEKVL QAGLIHGLKN SPFSGICLSN
401: INLRGNPGPR NSIWKCSDVS GAAIQVSPFP CAELTSSQKT GLQEIHVQSH HHHLQKVVCM MEMMVVA
101: YLARGAVIKA TQDPSQWPLV DPLPSYGRGR ERPGARYMSL LHGDGLHDVI ITGENGTIDG QGDVWWNMWR QRTLQFTRPH LVELMNSRGI LISNVIFKNS
201: PFWNIHPVYC SNVVIRYVTI LAPADSPNTD GIDPDSSSNV CIEDSYISVG DDLVAVKSGW DQYGIAYGRP SHGITIRRIT GSSPFAGIAV GSETSGGVVD
301: VLAEHISLFN MGVGIHIKTN VGRGGMIRNI TVSNVYMENA RTGIKIAGDV GDHPDENFNP NALPVVKGIK IKDVWGEKVL QAGLIHGLKN SPFSGICLSN
401: INLRGNPGPR NSIWKCSDVS GAAIQVSPFP CAELTSSQKT GLQEIHVQSH HHHLQKVVCM MEMMVVA
001: MWRLSVSIFL FSCLFVSSSS LGDSEATCSG IVPLRYRYDK ISITDFGGVG DGRTVNTKAF RAAIYRIQHL KRRGGTLLYI PPGVYLTESF NLTSHMTLYL
101: AKGAVIRAVQ DTWNWPLIDP LPSYGRGREL PGGRYMSFIH GDGLRDVVIT GQNGTIDGQG EVWWNMWRSR TLKYTRPNLI EFKDSKEIII SNVIFQNSPF
201: WNIHPVYCSN VVIHHVTILA PQDSPNTDGI DPDSSYNVCI EDSYISTGDD LVAIKSGWDQ YGIAYGRPSS NITIRRITGS SPFAGIAIGS ETSGGIKNII
301: AEHITLSNMG VGVNIKTNIG RGGYIKNIKI SDVYVDTAKY GIKIAGDTGD HPDENYNPNA LPVVKGIHIK NVWGVNVRNA GSIQGLKGSP FTGICLSEIN
401: LHGSLNSYKT WKCSDVSGTS LKVSPWPCSE LRTTGGSNLC SSTF
101: AKGAVIRAVQ DTWNWPLIDP LPSYGRGREL PGGRYMSFIH GDGLRDVVIT GQNGTIDGQG EVWWNMWRSR TLKYTRPNLI EFKDSKEIII SNVIFQNSPF
201: WNIHPVYCSN VVIHHVTILA PQDSPNTDGI DPDSSYNVCI EDSYISTGDD LVAIKSGWDQ YGIAYGRPSS NITIRRITGS SPFAGIAIGS ETSGGIKNII
301: AEHITLSNMG VGVNIKTNIG RGGYIKNIKI SDVYVDTAKY GIKIAGDTGD HPDENYNPNA LPVVKGIHIK NVWGVNVRNA GSIQGLKGSP FTGICLSEIN
401: LHGSLNSYKT WKCSDVSGTS LKVSPWPCSE LRTTGGSNLC SSTF
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SUP5]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.