CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053395_P001	Maize	extracellular	90.85	90.24
Os02t0256100-01	Rice	extracellular	81.47	82.39
KRG99037	Soybean	nucleus	62.5	63.35
KRH45957	Soybean	extracellular	62.05	62.75
Bra013734.1-P	Field mustard	extracellular, vacuole	62.05	62.61
CDY03516	Canola	extracellular, vacuole	62.05	62.61
VIT_02s0025g01330.t01	Wine grape	extracellular	62.28	62.42
CDY47619	Canola	extracellular, vacuole	61.83	62.39
CDX94222	Canola	extracellular	62.28	61.86
EES20030	Sorghum	extracellular	60.49	61.73
Bra019264.1-P	Field mustard	extracellular, vacuole	62.05	61.64
CDY10970	Canola	extracellular, vacuole	62.05	61.64
PGSC0003DMT400031687	Potato	extracellular	61.38	61.52
KRH14547	Soybean	extracellular	60.71	60.99
KRH73576	Soybean	extracellular	37.5	60.87
AT4G23820.1	Thale cress	extracellular, vacuole	60.04	60.59
EES01085	Sorghum	extracellular	60.27	60.4
Solyc08g082170.2.1	Tomato	nucleus	62.05	59.53
AT5G41870.1	Thale cress	extracellular	58.93	58.8
CDX67513	Canola	extracellular	57.59	57.72
Bra028511.1-P	Field mustard	extracellular	57.59	57.72
CDY13383	Canola	extracellular	56.47	56.85
KXG29050	Sorghum	extracellular	45.76	45.45
KXG24195	Sorghum	endoplasmic reticulum, extracellular, plasma membrane, plastid	48.21	43.46
EER90587	Sorghum	extracellular	45.76	43.16
EER96131	Sorghum	extracellular, mitochondrion	47.99	43.09
EES05901	Sorghum	extracellular, golgi	47.1	42.2
EER95599	Sorghum	extracellular	43.53	42.12
EER89047	Sorghum	extracellular, vacuole	45.31	41.01
EER96790	Sorghum	plastid	44.2	38.22
EER99085	Sorghum	extracellular, plasma membrane	23.44	22.73

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EntrezGene:8078349	UniProt:C5XZF9	EnsemblPlants:EES04867	ProteinID:EES04867
ProteinID:EES04867.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0016798	GO:GO:0016829	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295
PFscan:PS51257	PANTHER:PTHR31339	PANTHER:PTHR31339:SF3	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	EnsemblPlantsGene:SORBI_3004G113900	SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0001A852AF
RefSeq:XP_002451891.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:11495830..11499450

Molecular Weight (calculated)

48196.4 Da

IEP (calculated)

8.948

GRAVY (calculated)

-0.071

Length

448 amino acids

Sequence
(BLAST)

001: MAASWRGPVV AVLCAVVVLH AVAAAAAAAT SCAGVAPAKH RPEAISITDF GGVGDGRTLN TWAFRKAVYR IQHQRRRGGT TLHVPAGTWL TGSFNLTSHM
101: TLFLARGAVL KATQDTRRWP LMEPLPSYGR GRELPGARYA SFIHGNGLRD VAITGDKGVI DGQGEVWWNM WRRRTLEHTR PNLVEFMHST GIHISNIVLK
201: NSPFWNIHPV YCDNVVVTNM MILAPHDSPN TDGIDPDSSS NVCIEDSYIS TGDDLVAIKS GWDEYGIAYG RPSSGITIRR VRGSSPFSGI AIGSEASGGV
301: RDVLVEDCSI FDSGYGIHIK TNVGRGGYIR NVTVDNVRMS GVRISGVRIA GDVGDHPDAH FSQLAVPLVD AVRISNVWGV NVQHPGSLEG IRSSPFTRIC
401: LSNVKLFGWR KNDAAWRCRD VRGAALGVQP SPCAELATSF ASAGSSCS

Best Arabidopsis Sequence Match ( AT4G23820.1 )
(BLAST)

001: MWRLSVSIFL FSCLFVSSSS LGDSEATCSG IVPLRYRYDK ISITDFGGVG DGRTVNTKAF RAAIYRIQHL KRRGGTLLYI PPGVYLTESF NLTSHMTLYL
101: AKGAVIRAVQ DTWNWPLIDP LPSYGRGREL PGGRYMSFIH GDGLRDVVIT GQNGTIDGQG EVWWNMWRSR TLKYTRPNLI EFKDSKEIII SNVIFQNSPF
201: WNIHPVYCSN VVIHHVTILA PQDSPNTDGI DPDSSYNVCI EDSYISTGDD LVAIKSGWDQ YGIAYGRPSS NITIRRITGS SPFAGIAIGS ETSGGIKNII
301: AEHITLSNMG VGVNIKTNIG RGGYIKNIKI SDVYVDTAKY GIKIAGDTGD HPDENYNPNA LPVVKGIHIK NVWGVNVRNA GSIQGLKGSP FTGICLSEIN
401: LHGSLNSYKT WKCSDVSGTS LKVSPWPCSE LRTTGGSNLC SSTF

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SUP5]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.