CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
plastid 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020615_P001	Maize	plastid	93.82	94.19
Os09t0439400-01	Rice	plastid	84.94	83.65
TraesCS5D01G219200.1	Wheat	plastid	85.52	83.43
TraesCS5A01G212900.1	Wheat	plastid	85.52	83.43
TraesCS5B01G210900.1	Wheat	plastid	84.94	82.86
HORVU5Hr1G062220.2	Barley	extracellular	80.89	78.91
PGSC0003DMT400041391	Potato	cytosol	22.78	71.08
EES05901	Sorghum	extracellular, golgi	60.81	63.0
EES04867	Sorghum	extracellular, plasma membrane	38.22	44.2
EES01085	Sorghum	extracellular	37.07	42.95
EES20030	Sorghum	extracellular	35.91	42.37
EER95599	Sorghum	extracellular	37.26	41.68
KXG24195	Sorghum	endoplasmic reticulum, extracellular, plasma membrane, plastid	39.77	41.45
EER90587	Sorghum	extracellular	36.1	39.37
EER96131	Sorghum	extracellular, mitochondrion	37.64	39.08
KXG29050	Sorghum	extracellular	33.98	39.02
EER89047	Sorghum	extracellular, vacuole	37.07	38.79
VIT_13s0139g00110.t01	Wine grape	cytosol	6.37	34.38
EER99085	Sorghum	extracellular, plasma membrane	22.39	25.11

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EntrezGene:8062741	UniProt:C5XDP3	EnsemblPlants:EER96790	ProteinID:EER96790
ProteinID:EER96790.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334
PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF21	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	EnsemblPlantsGene:SORBI_3002G214900	SUPFAM:SSF51126	unigene:Sbi.9607	TMHMM:TMhelix	UniParc:UPI0001A834CC
RefSeq:XP_002460269.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:60704388..60708920

Molecular Weight (calculated)

56428.6 Da

IEP (calculated)

9.518

GRAVY (calculated)

-0.065

Length

518 amino acids

Sequence
(BLAST)

001: MLETAAAASS PRAAAAAVAA GAAAVVSSPR RGGGAAHHHR RWGPSSIRAY HLLLAFWLVG FALVVVWQTT SAGRVRLYTR PPMPKRAAAS LSLGQWVASP
101: PVYDLREFGA VGDGRTVNTA AFESAIAAIA ERGGGRLTVP AGRWLTAPFN LTSHMILFLA AGAEILGIQD ERYWPLMSPL PSYGYGREHK GPRYGSLIHG
201: QDLKDVTITG HNGTINGQGQ SWWVKFRRKL LNHTRGPLVQ LMRSSDIIIS NITLRDSPFW TLHTYDCKNV TISETTILAP IAGAPNTDGI DPDSCENVVI
301: KNCYISVGDD GIAIKSGWDQ YGIAYGRPSA NIVIQNVVIR SMVSAGVSIG SEMSGGVSDV LVENVHVWDS RRGVRIKTAP GRGAYVTNIV YRNITLENVR
401: VGIVIKTDYN EHPDEGFDPK AVPTIGNISY TSIHGHRVRV PVRIQGSAEI PVKNVTFHDM SIGIVDKKHH VFQCSFVQGQ VIGYVFPVPC KNLDLYDERR
501: ELVKQSTLQN ISDIDYSF

Best Arabidopsis Sequence Match ( AT3G42950.1 )
(BLAST)

001: MVRRFLSSHK SLITVFWIAT FASLFIWQFG GVSTNLYSGF SLFWSSSSTT TTVFSGGFPK LRPVVFNLTD FGAVGDGVTI NTEAFEKAIY KISKLAKKGG
101: GQLNVPPGRW LTAPFNLTSY MTLFLSENAE ILALQDEKYW SLLPPLPSYG YGREHHGPRY GSFIHGQNLR DVVVTGNNGS INGQGQTWWK KYRQKLLNHT
201: RGPLVQIMWS SDIVFANITL RDSPFWTLHP YDCKNVTITN MTILAPVFEA PNTDGIDPDS CEDMLIENSY ISVGDDGIAI KSGWDQYGTT YGKPSKNILI
301: RNLIIRSMVS AGISIGSEMS GGVSNITVEN ILIWSSRRGV RIKTAPGRGG YVRDITFRNV TLDELRVGIV IKTDYNEHPD GGFNPQAFPI LENINYTGIY
401: GQGVRVPVRI QGSKEIPVKN VTFRDMSVGI TYKKKHIFQC AYVEGRVIGT IFPAPCDNLD RYDEQERLVK QSDSQNATDI DYEI

Arabidopsis Description

AT3g42950/F18P9_110 [Source:UniProtKB/TrEMBL;Acc:Q9M1L0]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.