Factsheet for Zm00001d020615_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
extracellular 3
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96790	Sorghum	plastid	94.19	93.82
Os09t0439400-01	Rice	plastid	84.3	82.7
TraesCS5A01G212900.1	Wheat	plastid	84.88	82.49
TraesCS5D01G219200.1	Wheat	plastid	84.88	82.49
TraesCS5B01G210900.1	Wheat	plastid	84.3	81.92
HORVU5Hr1G062220.2	Barley	extracellular	80.23	77.97
PGSC0003DMT400041391	Potato	cytosol	22.48	69.88
Zm00001d052103_P001	Maize	plasma membrane	60.47	63.03
Zm00001d018548_P001	Maize	cytosol	19.96	44.4
Zm00001d053395_P001	Maize	extracellular	38.57	44.12
Zm00001d009717_P001	Maize	extracellular	36.05	41.7
Zm00001d034990_P001	Maize	plasma membrane	39.53	41.38
Zm00001d027441_P001	Maize	plasma membrane	37.02	41.25
Zm00001d021964_P001	Maize	cytosol	13.18	40.48
Zm00001d010681_P001	Maize	cytosol	22.09	40.28
Zm00001d011369_P001	Maize	extracellular	34.69	40.22
Zm00001d035899_P001	Maize	extracellular	37.4	39.71
Zm00001d023813_P001	Maize	extracellular, vacuole	34.88	39.05
Zm00001d019282_P001	Maize	mitochondrion	38.37	38.98
Zm00001d034727_P003	Maize	plastid	35.66	35.87
VIT_13s0139g00110.t01	Wine grape	cytosol	6.59	35.42
Zm00001d048696_P001	Maize	extracellular	33.72	35.22
Zm00001d020931_P001	Maize	extracellular	22.48	24.95

Protein Annotations

EntrezGene:103632812	Gene3D:2.160.20.10	MapMan:50.3.2	UniProt:A0A1D6I580	GO:GO:0003674	GO:GO:0003824
GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798
GO:GO:0016829	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	ProteinID:ONM55271.1	PFAM:PF00295
PANTHER:PTHR31339	PANTHER:PTHR31339:SF21	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI000221D7EA	EnsemblPlantsGene:Zm00001d020615	EnsemblPlants:Zm00001d020615_P001	EnsemblPlants:Zm00001d020615_T001
SEG:seg	:	:	:	:	:

Description

Pectin lyase-like superfamily protein

Coordinates

chr7:+:125162651..125167090

Molecular Weight (calculated)

56104.2 Da

IEP (calculated)

9.731

GRAVY (calculated)

-0.070

Length

516 amino acids

Sequence
(BLAST)

001: MLEATAAASS PRAAAAAVAA GAAAAAVVSS PRRGGGSAHN HRRWAPAPFR ACLLALWLLG FALVFLWQST SVGRVRLYTR PPMPKRAVAS LGHWAASPPV
101: YDLREFGAVG DGRTVNTAAF ESAIAAIAER GGGRLTVPAG RWLTAPFNLT SHMTLFLAAG AEILGIQDER YWPLMSPLPS YGYGREHKGP RYGSLIHGQD
201: LKHVTITGHN GTINGQGQSW WVKFRRKLLN HTRGPLVQLM RSSNIIISNI TLRDSPFWTL HTYDCKNVTI SETTILAPIA GAPNTDGIDP DSCENVVIKN
301: CYISVGDDGI AIKSGWDQYG IAYGRPSANI TIQNVVIRSM VSAGVSIGSE MSGGVSDVLV ENVHVWDSRR GVRIKTAPGR GAYVTNVIYQ NITFENVRVG
401: IVIKTDYNEH PDEGFDPKAV PTIGNISYTS IHGHRVRVPV RIQGSAQIPV KNVTFHDMSI GIVDKKHHVF QCSFVQGQVI GYVFPVPCKN LDLYDERRGL
501: VKQSTLQNIS DIDYSF

Best Arabidopsis Sequence Match ( AT3G42950.1 )
(BLAST)

001: MVRRFLSSHK SLITVFWIAT FASLFIWQFG GVSTNLYSGF SLFWSSSSTT TTVFSGGFPK LRPVVFNLTD FGAVGDGVTI NTEAFEKAIY KISKLAKKGG
101: GQLNVPPGRW LTAPFNLTSY MTLFLSENAE ILALQDEKYW SLLPPLPSYG YGREHHGPRY GSFIHGQNLR DVVVTGNNGS INGQGQTWWK KYRQKLLNHT
201: RGPLVQIMWS SDIVFANITL RDSPFWTLHP YDCKNVTITN MTILAPVFEA PNTDGIDPDS CEDMLIENSY ISVGDDGIAI KSGWDQYGTT YGKPSKNILI
301: RNLIIRSMVS AGISIGSEMS GGVSNITVEN ILIWSSRRGV RIKTAPGRGG YVRDITFRNV TLDELRVGIV IKTDYNEHPD GGFNPQAFPI LENINYTGIY
401: GQGVRVPVRI QGSKEIPVKN VTFRDMSVGI TYKKKHIFQC AYVEGRVIGT IFPAPCDNLD RYDEQERLVK QSDSQNATDI DYEI

Arabidopsis Description

AT3g42950/F18P9_110 [Source:UniProtKB/TrEMBL;Acc:Q9M1L0]
SUBAcon: [extracellular,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.