Factsheet for TraesCS5D01G219200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	extracellular, plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G212900.1	Wheat	plastid	99.44	99.44
TraesCS5B01G210900.1	Wheat	plastid	98.87	98.87
HORVU5Hr1G062220.2	Barley	extracellular	86.82	86.82
EER96790	Sorghum	plastid	83.43	85.52
Zm00001d020615_P001	Maize	plastid	82.49	84.88
Os09t0439400-01	Rice	plastid	83.05	83.84
PGSC0003DMT400041391	Potato	cytosol	22.03	70.48
TraesCS6D01G320600.1	Wheat	mitochondrion	57.06	61.21
TraesCS3D01G230000.1	Wheat	extracellular	38.61	45.56
TraesCS7D01G320900.1	Wheat	plastid	40.49	44.33
TraesCS7D01G016300.2	Wheat	extracellular	38.04	41.31
TraesCS5D01G102900.1	Wheat	unclear	32.58	38.53
TraesCS4D01G146700.1	Wheat	extracellular, golgi, vacuole	33.15	38.51
TraesCS5D01G513600.1	Wheat	plastid	35.97	35.97
VIT_13s0139g00110.t01	Wine grape	cytosol	6.4	35.42
TraesCS3D01G387300.1	Wheat	unclear	22.98	26.87
TraesCS5D01G271900.1	Wheat	extracellular, plasma membrane, vacuole	21.66	25.16

Protein Annotations

EnsemblPlants:TraesCS5D01G219200.1	EnsemblPlantsGene:TraesCS5D01G219200	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31339	PANTHER:PTHR31339:SF21	PFAM:PF00295
SEG:seg	SMART:SM00710	SUPFAM:SSF51126	TMHMM:TMhelix	MapMan:50.3.2	:

Description

No Description!

Coordinates

chr5D:-:328436462..328439337

Molecular Weight (calculated)

57934.5 Da

IEP (calculated)

9.838

GRAVY (calculated)

-0.087

Length

531 amino acids

Sequence
(BLAST)

001: MAEIAVGVSS PRASVAAAAA AAAASASAGP AVLSSPRAAL SRGAHQFHHR RWAPPAISPS YRAYLVALWL VGFVLVFLWQ NTSMGRLRLY NRPPMPKRAP
101: SAAASMGQWV ASPPVYDLRE FGGVGDGRTL NTAAFEAAVA AISERGGGRL TVPAGRWLTA PFNLTSHMTL FLAAGAEILG VQDERYWPLM SPLPSYGYGR
201: EHKGPRYGSL IHGQDLKDVI ITGHNGTING QGQSWWIKFR KKLLNHTRGP LVQLMRSSNI TISNITLRDS PFWTLHLYDC KDVTVSGTTI LAPIAGAPNT
301: DGIDPDSCEN VMIENCYISV GDDGVAIKSG WDQYGIAYGR PSTNITVRNV IIRSMVSAGV SIGSEMSGGV SNVLVENVHI WSSRRGVRIK TAPGRGAYVN
401: NIVYRNITLE NVRVGIVIKT DYNEHPDERF DPKAVPVVGN ISYTSIHGQR VRVPVRIQGS AEIPVRNVTF HDMSVGILDK KHHVFQCSFV QGQVIGYVFP
501: VPCKNLDLYN ERREMVKQST LQNISDIDYS F

Best Arabidopsis Sequence Match ( AT1G19170.1 )
(BLAST)

001: MVENLFPSRF QFHLQRLDPK RRLTSLLASH KTLFTFLWIT AFGSVFLWQR TAYIEGGSGT GPVGGKFTIF GKIKPIQPIP RLRPVVFDLK DFGGVGDGFT
101: LNTEAFERAV ISISKLGGSS GGGQLNVPPG RWLTAPFNLT SHMTLFLAED SEILGVEDEK YWPLMPPLPS YGYGRERPGP RYGSLIHGQN LKDIVITGHN
201: GTINGQGQSW WKKHQRRLLN YTRGPLVQIM WSSDIVIANI TMRDSPFWTL HPYDCKNVTI RNVTILAPVT GAPNTDGIDP DSCEDMVIED CYISTGDDAI
301: AIKSGWDQFG IAYGRPSTNI LIRNLVVRSV ISAGVSIGSE MSGGISNVTI ENLLIWNSRR GIRIKTAPGR GGYIRNITYK NLTLDNVRVG IVIKTDYNEH
401: ADDNYDRKAY PILSGFSFAG IHGQGVRVPV RIHGSEQIPV RNVTFRDMSV GLTYKKKHIF QCSFVKGRVF GSIFPRPCEN FDVYDEEGRL VKPAAESNVA
501: DIDYDI

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IE17]
SUBAcon: [mitochondrion,peroxisome,extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.