Factsheet for TraesCS5D01G513600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G513100.1	Wheat	extracellular	87.57	97.69
TraesCS4A01G358700.1	Wheat	extracellular	80.98	95.77
HORVU5Hr1G117470.3	Barley	extracellular	83.8	93.49
Os03t0833800-01	Rice	extracellular	76.46	85.29
EER90587	Sorghum	extracellular	73.82	82.53
Zm00001d034727_P003	Maize	plastid	72.88	75.44
GSMUA_Achr8P06180_001	Banana	extracellular	53.11	71.76
GSMUA_AchrUn_...	Banana	extracellular	51.6	69.72
VIT_07s0005g02590.t01	Wine grape	extracellular, vacuole	57.06	65.02
KRH69147	Soybean	nucleus	55.37	63.36
KRH33649	Soybean	nucleus	54.99	62.93
KRG96607	Soybean	extracellular	55.18	62.61
KRH68340	Soybean	nucleus	54.61	61.97
AT3G62110.1	Thale cress	vacuole	53.86	60.72
CDY25090	Canola	extracellular, golgi	51.79	60.04
Bra003485.1-P	Field mustard	extracellular, golgi	51.6	59.83
CDX67875	Canola	extracellular, golgi	51.6	59.83
Bra007662.1-P	Field mustard	extracellular, plasma membrane	50.66	58.48
CDY11403	Canola	extracellular, plasma membrane	50.66	58.48
CDX76617	Canola	extracellular, plasma membrane	49.72	57.39
TraesCS4D01G146700.1	Wheat	extracellular, golgi, vacuole	43.88	50.98
TraesCS5D01G102900.1	Wheat	unclear	42.94	50.78
TraesCS3D01G230000.1	Wheat	extracellular	40.3	47.56
TraesCS7D01G320900.1	Wheat	plastid	41.62	45.57
TraesCS7D01G016300.2	Wheat	extracellular	39.55	42.94
TraesCS6D01G320600.1	Wheat	mitochondrion	36.91	39.6
TraesCS5D01G219200.1	Wheat	plastid	35.97	35.97
TraesCS3D01G387300.1	Wheat	unclear	19.59	22.91
TraesCS5D01G271900.1	Wheat	extracellular, plasma membrane, vacuole	19.4	22.54

Protein Annotations

EnsemblPlants:TraesCS5D01G513600.1	EnsemblPlantsGene:TraesCS5D01G513600	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31339	PANTHER:PTHR31339:SF20	PFAM:PF00295
SEG:seg	SignalP:SignalP-noTM	SMART:SM00710	SUPFAM:SSF51126	MapMan:50.3.2	:

Description

No Description!

Coordinates

chr5D:+:537671747..537675332

Molecular Weight (calculated)

57359.3 Da

IEP (calculated)

7.161

GRAVY (calculated)

0.015

Length

531 amino acids

Sequence
(BLAST)

001: MYIPPCPFLL MGFLLFVCSS RRRRIQGAGF DRTRVKRGRL WGGGRGRGRS VAAGKMGRSA PVFQALLVFL TIIETQWSSV SGMYCADMAS TVYRPHSVTI
101: TEFGAVGDGV TLNTKAFQNA IFYLNSFADK GGAQLFVPAG RWLTGGFSLI SHLTLSLDKD AVIIGSPHSS DWPVIDPLPS YGRGRELPGG RHQSLIFGSH
201: LTDVIITGAN GTIDGQGAIW WDWFYNNTLN YTRPHLVELM YSTNVVISNL TFKNSPFWNI HPVYCSQVIV EHITILAPLN SPNTDGINPD SSTNVCISHC
301: YVRNGDDVVV IKSGWDEYGI SFAQPSSNIS ISNITGETGG GAGIAIGSEM SGGISEVRAE GIRIVNSLHG IRIKTAPGRG GYVRNVYIAD VSMHNVSMAI
401: RINGNYGEHP DNNYDKNALP IISNITIENV VGVDVGVAGI LEGIEGDNFS SICISNVSLS VRSRHPWNCS LIQGYSNSVT PESCEQLRTD CEETSICYDG
501: GSSLAVGSRA SIHNKPSANI LLNSLLQLVS L

Best Arabidopsis Sequence Match ( AT3G62110.2 )
(BLAST)

001: MKRSFLLLYV LLVQAFYGAW CSVGESLHCE YSNLASLHRP HSVSITEFGA VGDGVTLNTK AFQNALFYLN SFSDKGGAKL FVPAGQWLTG SFDLISHLTL
101: WLDKGATILG STSSENWPVV DPLPSYGRGR ELPGRRHRSL IYGQNLTDVV ITGENGTIDG QGTVWWDWFR NGELNYTRPH LVELMNSTGL IISNLTFLNS
201: PFWNIHPVYC RDVVVKNLTI LAPLESPNTD GVDPDSSTNV CIEDCYIVTG DDLVSIKSGW DEYGISYARP SSKIKINRLT GQTTSSSGIA IGSEMSGGVS
301: EIYIKDLHLF NSNTGIRIKT SAGRGGYVRN VHILNVKLDN VKKAIRFTGK YGEHPDEKYD PKALPAIEKI TFENVNGDGI GVAGLLEGIE GDVFKNICFL
401: NVTLRVKKNS KKSPWECSNV RGYSQWVSPE ITCDSLKESI FPEHGSDCFG LSENNMEISS GLSRSPWLLS W

Arabidopsis Description

AT3g62110 [Source:UniProtKB/TrEMBL;Acc:Q9FPJ2]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.