Factsheet for TraesCS5B01G513100.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G358700.1	Wheat	extracellular	90.76	96.21
HORVU5Hr1G117470.3	Barley	extracellular	93.91	93.91
TraesCS5D01G513600.1	Wheat	plastid	97.69	87.57
Os03t0833800-01	Rice	extracellular	85.92	85.92
EER90587	Sorghum	extracellular	83.61	83.79
Zm00001d034727_P003	Maize	plastid	81.93	76.02
GSMUA_Achr8P06180_001	Banana	extracellular	59.45	72.01
GSMUA_AchrUn_...	Banana	extracellular	57.77	69.97
VIT_07s0005g02590.t01	Wine grape	extracellular, vacuole	64.08	65.45
KRH69147	Soybean	nucleus	61.76	63.36
KRH33649	Soybean	nucleus	61.34	62.93
KRG96607	Soybean	extracellular	61.76	62.82
KRH68340	Soybean	nucleus	61.13	62.18
AT3G62110.1	Thale cress	vacuole	60.29	60.93
CDY25090	Canola	extracellular, golgi	57.98	60.26
Bra003485.1-P	Field mustard	extracellular, golgi	57.77	60.04
CDX67875	Canola	extracellular, golgi	57.77	60.04
Bra007662.1-P	Field mustard	extracellular, plasma membrane	56.72	58.7
CDY11403	Canola	extracellular, plasma membrane	56.72	58.7
CDX76617	Canola	extracellular, plasma membrane	55.67	57.61
TraesCS5B01G097100.2	Wheat	extracellular	48.74	51.67
TraesCS4B01G144700.2	Wheat	extracellular, golgi, vacuole	48.32	50.33
TraesCS3B01G253000.1	Wheat	extracellular	45.38	48.0
TraesCS7B01G224700.1	Wheat	plastid	46.85	45.98
TraesCS4B01G344700.1	Wheat	extracellular	43.49	42.59
TraesCS6B01G371200.2	Wheat	mitochondrion	42.02	40.4
TraesCS5B01G210900.1	Wheat	plastid	40.34	36.16
TraesCS5B01G263700.2	Wheat	extracellular, plasma membrane	20.59	21.21

Protein Annotations

EnsemblPlants:TraesCS5B01G513100.1	EnsemblPlantsGene:TraesCS5B01G513100	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31339	PANTHER:PTHR31339:SF20	PFAM:PF00295
SEG:seg	SignalP:SignalP-noTM	SMART:SM00710	SUPFAM:SSF51126	MapMan:50.3.2	:

Description

No Description!

Coordinates

chr5B:+:678336123..678339236

Molecular Weight (calculated)

51291.7 Da

IEP (calculated)

5.966

GRAVY (calculated)

0.033

Length

476 amino acids

Sequence
(BLAST)

001: MRRSAPVFQA LLVFLTIIET QWSSVSGMYC ADMASTVYRP HSVTITEFGA IGDGVTLNTK AFQNAIFYLN SFADKGGAQL FVPAGRWLTG GFNLISHLTL
101: SLDKDAVIIG SPHSSDWPVI DPLPSYGRGR ELPGGRHQSL IFGSHLTDVI ITGANGTIDG QGAIWWDWFH NNTLNYTRPH LVELMYSTNV VISNLTFKNS
201: PFWNIHPVYC SQVIVEHVTI LAPLNSPNTD GINPDSSTNV CISHCYVRNG DDVIVIKSGW DEYGISFAQP SSNISISNIT GETGGGAGIA IGSEMSGGIS
301: EVRAEGLRIV NSLHGIRIKT APGRGGYVRN VYIANVSMHN VSMAIRINGN YGEHPDNNYD RNALPIISNI TIENVVGVDV GVAGILEGIE GDNFSSICIS
401: NVSLSVRSRH PWNCSLIQGY SNSVTPESCE QLRADCEETS ICYDGGSSLA VGSRASIHNK PSASILLNSL LQLVSL

Best Arabidopsis Sequence Match ( AT3G62110.2 )
(BLAST)

001: MKRSFLLLYV LLVQAFYGAW CSVGESLHCE YSNLASLHRP HSVSITEFGA VGDGVTLNTK AFQNALFYLN SFSDKGGAKL FVPAGQWLTG SFDLISHLTL
101: WLDKGATILG STSSENWPVV DPLPSYGRGR ELPGRRHRSL IYGQNLTDVV ITGENGTIDG QGTVWWDWFR NGELNYTRPH LVELMNSTGL IISNLTFLNS
201: PFWNIHPVYC RDVVVKNLTI LAPLESPNTD GVDPDSSTNV CIEDCYIVTG DDLVSIKSGW DEYGISYARP SSKIKINRLT GQTTSSSGIA IGSEMSGGVS
301: EIYIKDLHLF NSNTGIRIKT SAGRGGYVRN VHILNVKLDN VKKAIRFTGK YGEHPDEKYD PKALPAIEKI TFENVNGDGI GVAGLLEGIE GDVFKNICFL
401: NVTLRVKKNS KKSPWECSNV RGYSQWVSPE ITCDSLKESI FPEHGSDCFG LSENNMEISS GLSRSPWLLS W

Arabidopsis Description

AT3g62110 [Source:UniProtKB/TrEMBL;Acc:Q9FPJ2]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.