Factsheet for Os03t0833800-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

extracellular: 24083427

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90587	Sorghum	extracellular	88.45	88.63
TraesCS4A01G358700.1	Wheat	extracellular	82.35	87.31
TraesCS5B01G513100.1	Wheat	extracellular	85.92	85.92
HORVU5Hr1G117470.3	Barley	extracellular	84.66	84.66
Zm00001d034727_P003	Maize	plastid	85.29	79.14
TraesCS5D01G513600.1	Wheat	plastid	85.29	76.46
Os07t0245200-01	Rice	plasma membrane	71.64	76.46
GSMUA_Achr8P06180_001	Banana	extracellular	60.08	72.77
GSMUA_AchrUn_...	Banana	extracellular	58.4	70.74
VIT_07s0005g02590.t01	Wine grape	extracellular, vacuole	65.55	66.95
KRG96607	Soybean	extracellular	63.45	64.53
KRH69147	Soybean	nucleus	62.82	64.44
KRH68340	Soybean	nucleus	62.82	63.89
KRH33649	Soybean	nucleus	62.18	63.79
AT3G62110.1	Thale cress	vacuole	61.76	62.42
CDY25090	Canola	extracellular, golgi	58.82	61.14
Bra003485.1-P	Field mustard	extracellular, golgi	58.61	60.92
CDX67875	Canola	extracellular, golgi	58.61	60.92
CDY11403	Canola	extracellular, plasma membrane	57.77	59.78
Bra007662.1-P	Field mustard	extracellular, plasma membrane	57.77	59.78
CDX76617	Canola	extracellular, plasma membrane	56.72	58.7
Os12t0554800-01	Rice	cytosol, extracellular	50.42	56.6
Os01t0618900-01	Rice	cytosol, extracellular	38.87	56.23
Os11t0658800-01	Rice	extracellular	51.05	54.12
Os05t0587000-01	Rice	extracellular	46.01	48.88
Os06t0106800-01	Rice	extracellular	47.48	46.6
Os03t0124900-01	Rice	extracellular	43.91	45.63
Os02t0256100-01	Rice	extracellular	42.23	45.37
Os08t0107300-00	Rice	extracellular, mitochondrion	45.59	45.02
Os02t0781000-01	Rice	extracellular	25.42	42.46
Os09t0439400-01	Rice	plastid	40.34	36.5
Os09t0487600-01	Rice	extracellular	22.9	23.85

Protein Annotations

Gene3D:2.160.20.10	EntrezGene:4334689	MapMan:50.3.2	ProteinID:AAR88591.1	ProteinID:ABF99733.1	ProteinID:ABF99734.1
EMBL:AK066209	ProteinID:BAF13726.1	ProteinID:BAS87232.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334
EnsemblPlantsGene:Os03g0833800	EnsemblPlants:Os03t0833800-01	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF20	InterPro:PbH1
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	UniProt:Q75LI0	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM
UniParc:UPI0000232A7B	RefSeq:XP_015627799.1	RefSeq:XP_015627800.1	SEG:seg	:	:

Description

Pectin lyase fold/virulence factor domain containing protein. (Os03t0833800-01)

Coordinates

chr3:+:35037354..35041627

Molecular Weight (calculated)

51608.2 Da

IEP (calculated)

6.040

GRAVY (calculated)

-0.021

Length

476 amino acids

Sequence
(BLAST)

001: MRRSASLLRV LLVFITMVGT QWSNVSSTYC KDMASSVYRP HSVTITEFGA VGDGVTLNTK AFQNAIFYLN SFADKGGAQL FVPAGRWLTG SFSLISHLTL
101: SLDKDAEIIG SPDSSDWPVI DPLPSYGRGR ELPGKRHQSL IFGTNLTDVI ITGANGTIDG QGAIWWDWFH SNTLNYTRPH LVELMYSTDV VISNLTFKNS
201: PFWNIHPVYC SQVLVQHVTI LAPLNSPNTD GIDPDSSTNV CIDHCYVRNG DDVIVIKSGW DEYGISFARP STNISISNIT GETRGGAGIA FGSEMSGGIS
301: EVRAEGLRIV NSMHGIRIKT APGRGGYVKN VYISDVSMDN VSMAIRITGN FGEHPDDKYD RNALPMISNI TIENVVGVNV GVAGILEGIE GDNFSSICLS
401: NVSLSVQSMH PWNCSLIEGY SNSVIPESCE QLRTDCGQTP ICYDGGSSSA IHAQAARHRL SSASRLLNPL LKLAML

Best Arabidopsis Sequence Match ( AT3G62110.2 )
(BLAST)

001: MKRSFLLLYV LLVQAFYGAW CSVGESLHCE YSNLASLHRP HSVSITEFGA VGDGVTLNTK AFQNALFYLN SFSDKGGAKL FVPAGQWLTG SFDLISHLTL
101: WLDKGATILG STSSENWPVV DPLPSYGRGR ELPGRRHRSL IYGQNLTDVV ITGENGTIDG QGTVWWDWFR NGELNYTRPH LVELMNSTGL IISNLTFLNS
201: PFWNIHPVYC RDVVVKNLTI LAPLESPNTD GVDPDSSTNV CIEDCYIVTG DDLVSIKSGW DEYGISYARP SSKIKINRLT GQTTSSSGIA IGSEMSGGVS
301: EIYIKDLHLF NSNTGIRIKT SAGRGGYVRN VHILNVKLDN VKKAIRFTGK YGEHPDEKYD PKALPAIEKI TFENVNGDGI GVAGLLEGIE GDVFKNICFL
401: NVTLRVKKNS KKSPWECSNV RGYSQWVSPE ITCDSLKESI FPEHGSDCFG LSENNMEISS GLSRSPWLLS W

Arabidopsis Description

AT3g62110 [Source:UniProtKB/TrEMBL;Acc:Q9FPJ2]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.