Factsheet for Os03t0124900-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

plasma membrane: 18260611
extracellular: 19038476

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 19038476 doi

XY Chen, ST Kim, WK Cho, Y Rim, S Kim, SW Kim, KY Kang, ZY Park, JY Kim

Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G513600.1	Wheat	extracellular	84.93	86.25
Zm00001d027441_P001	Maize	plasma membrane	83.19	82.29
EER95599	Sorghum	extracellular	82.75	81.86
TraesCS4B01G344700.1	Wheat	extracellular	84.93	80.04
CDY10898	Canola	cytosol	7.64	68.63
PGSC0003DMT400094734	Potato	cytosol	15.72	68.57
CDY69951	Canola	cytosol	18.56	67.46
Zm00001d018548_P001	Maize	cytosol	33.62	66.38
Zm00001d010681_P001	Maize	cytosol	40.83	66.08
Solyc01g094970.2.1	Tomato	extracellular	53.28	59.95
CDY70893	Canola	cytosol	46.51	59.5
Solyc08g081480.2.1	Tomato	extracellular	61.14	57.97
PGSC0003DMT400055769	Potato	extracellular	60.26	57.86
PGSC0003DMT400032104	Potato	extracellular	60.92	57.76
VIT_02s0025g00260.t01	Wine grape	extracellular	60.48	57.71
CDY69255	Canola	cytosol	47.16	57.45
PGSC0003DMT400000538	Potato	extracellular	59.17	57.05
KRH48075	Soybean	extracellular	59.61	56.64
Solyc05g049980.2.1	Tomato	extracellular	60.04	56.58
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	59.17	56.58
KRH41230	Soybean	nucleus	60.92	56.48
KRH59960	Soybean	nucleus	60.26	56.1
Os06t0106800-01	Rice	extracellular	59.17	55.88
KRH48076	Soybean	extracellular	57.64	55.7
CDY65355	Canola	extracellular	57.21	55.51
KRH40394	Soybean	extracellular, nucleus	58.52	55.37
KRH06594	Soybean	mitochondrion	59.17	55.19
KRH00832	Soybean	nucleus	58.3	55.17
Bra007609.1-P	Field mustard	extracellular	56.55	55.11
CDY48913	Canola	extracellular	56.55	54.99
CDY44105	Canola	cytosol, nucleus, plasma membrane	52.62	53.32
Bra019299.1-P	Field mustard	extracellular, plasma membrane	57.21	53.14
AT4G23500.1	Thale cress	extracellular, plasma membrane	56.99	52.73
Bra013697.1-P	Field mustard	extracellular, plasma membrane	56.55	52.54
Os01t0618900-01	Rice	cytosol, extracellular	34.93	48.63
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	17.9	46.59
Os05t0587000-01	Rice	extracellular	45.41	46.43
AT3G61490.4	Thale cress	cytosol, plastid	58.52	45.5
Os07t0245200-01	Rice	plasma membrane	43.23	44.39
Os03t0833800-01	Rice	extracellular	45.63	43.91
Os02t0256100-01	Rice	extracellular	41.7	43.12
Os08t0107300-00	Rice	extracellular, mitochondrion	45.2	42.95
CDY10899	Canola	cytosol	8.95	42.71
Os12t0554800-01	Rice	cytosol, extracellular	37.99	41.04
Os11t0658800-01	Rice	extracellular	39.96	40.76
Os02t0781000-01	Rice	extracellular	23.8	38.25
Os09t0439400-01	Rice	plastid	43.01	37.45
Solyc06g030520.1.1	Tomato	cytosol	7.64	30.7
PGSC0003DMT400065330	Potato	nucleus	11.57	25.85
KRH33610	Soybean	plastid	9.17	23.33
Os09t0487600-01	Rice	extracellular	21.4	21.44

Protein Annotations

Gene3D:2.160.20.10	EntrezGene:4331458	MapMan:50.3.2	ProteinID:ABF93740.1	ProteinID:BAF10727.1	ProteinID:BAS82065.1
ProteinID:EAZ25422.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	EnsemblPlantsGene:Os03g0124900	EnsemblPlants:Os03t0124900-01
PFAM:PF00295	PFscan:PS51257	PANTHER:PTHR31339	PANTHER:PTHR31339:SF39	InterPro:PbH1	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	UniProt:Q10SE9	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI0000DB483D	RefSeq:XP_015627855.1	SEG:seg	:	:	:

Description

Pectin lyase fold/virulence factor domain containing protein. (Os03t0124900-01)

Coordinates

chr3:+:1430583..1433728

Molecular Weight (calculated)

48900.2 Da

IEP (calculated)

5.834

GRAVY (calculated)

-0.050

Length

458 amino acids

Sequence
(BLAST)

001: MAKKTILQVV CAVALVALCA CGVAASPSSP AGAGCRKHVA RITEYGGVGD GRRSNTAAFA KAVADLSLRA GDGGAALVVP KGKWLTGPFN LTSHFTLFLD
101: HGAEILASQN LEDWPLIAPL PSYGRGRDEP GPRYSNFIAG SNLTDVIITG RNGTINGQGQ VWWDKFHAKE LTYTRGYLLE LLYSNNIIIS NVTFVDSPSW
201: NLHPTYCTNV TISGITILAP LNSPNTDGID PDSSSHVKIE DSYIVSGDDC IAVKSGWDQY GIKFNMPSQH ILIRRLTCIS PTSAMIALGS EMSGGIRDVR
301: AVDNVAIDTE SAVRIKSGVG RGGYVKDVFV RGLSLHTMKW VFWMTGNYGQ HPDNSSDPNA LPEVTGINYS DVFAENVTMA GRMEGIPNDP YTGICMSNVT
401: AQLAPDAKKL QWNCTDVKGV ASDVSPVPCP ELGAAGKPCA FPEEELVIGP PELPTCSY

Best Arabidopsis Sequence Match ( AT3G61490.4 )
(BLAST)

001: MSLFAITSAF SEDNVTAISS NQLIPLNDKI IANLIRSPNT QTKSLNLASS FLHSLSAYKY SYSLLLTSSS NHLASPHSQR AHKSQVILFL SLKHKHTQMY
101: KQTHHFCFQI YKTMKNILAC IVTIITLSNL ITISQGRRVS QSFETFEYTA IICRSHSASI TEYGGVGDGK TLNTKAFQSA VDHLSQYSSE GGAQLFVPAG
201: KWLTGSFNLT SHFTLFLHKD AILLAAQDLN EYPILKALPS YGRGRDAAGG RFASLIFGTN LSDVIITGNN GTIDGQGSFW WQKFHGGKLK YTRPYLIELM
301: FSDTIQISNL TFLDSPSWNI HPVYSSNIIV KGVTIIAPVK SPNTDGINPD SCTNTRIEDC YIISGDDCIA VKSGWDEYGI SFGMPTKHLV IRRLTCISPY
401: SAAIALGSEM SGGIEDVRAE DITAYQTESG VRIKTAVGRG AFVKNIYVKG MNLHTMKWVF WMTGNYKAHA DSHYDPHALP EITGINYRDI VAENVSMAGR
501: LEGISGDPFT GICISNATIS MAAKHKKAIW MCSDVEGVTS GVDPKPCDLL DGQESETTKK KMIDGGCDFP TDVLEIDNVE LKTCSYQMS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS88]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.