Factsheet for PGSC0003DMT400032104

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g081480.2.1	Tomato	extracellular	96.89	96.89
CDY69951	Canola	cytosol	21.33	81.75
CDY70893	Canola	cytosol	56.31	75.98
CDY69255	Canola	cytosol	56.94	73.14
PGSC0003DMT400055769	Potato	extracellular	69.77	70.65
PGSC0003DMT400094734	Potato	cytosol	15.32	70.48
CDY44105	Canola	cytosol, nucleus, plasma membrane	64.39	68.81
Bra013697.1-P	Field mustard	extracellular, plasma membrane	69.36	67.95
AT4G23500.1	Thale cress	extracellular, plasma membrane	69.57	67.88
Bra019299.1-P	Field mustard	extracellular, plasma membrane	69.15	67.75
PGSC0003DMT400000538	Potato	extracellular	65.42	66.53
GSMUA_Achr4P05580_001	Banana	cytosol	42.03	65.06
GSMUA_Achr11P...	Banana	cytosol	41.61	64.42
PGSC0003DMT400024595	Potato	cytosol	61.9	62.68
Zm00001d035899_P001	Maize	extracellular	62.73	62.35
GSMUA_Achr11P...	Banana	extracellular	61.08	61.97
GSMUA_Achr11P...	Banana	cytosol	39.13	61.97
Os06t0106800-01	Rice	extracellular	61.28	61.03
EER89047	Sorghum	extracellular, vacuole	62.53	61.01
Os03t0124900-01	Rice	extracellular	57.76	60.92
TraesCS5A01G513600.1	Wheat	extracellular	56.11	60.09
EER95599	Sorghum	extracellular	57.35	59.83
Zm00001d027441_P001	Maize	plasma membrane	57.35	59.83
TraesCS7D01G016300.2	Wheat	extracellular	59.01	58.28
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	24.02	57.71
TraesCS7A01G019900.1	Wheat	cytosol	31.88	57.46
TraesCS4B01G344700.1	Wheat	extracellular	56.52	56.17
TraesCS7A01G019500.1	Wheat	cytosol	30.85	55.6
TraesCSU01G066000.1	Wheat	golgi, unclear	59.42	54.56
TraesCS7A01G019400.1	Wheat	extracellular, plastid, vacuole	58.8	54.51
Zm00001d018548_P001	Maize	cytosol	25.67	53.45
Zm00001d010681_P001	Maize	cytosol	30.64	52.3
TraesCS7A01G019700.1	Wheat	cytosol	12.01	47.15
PGSC0003DMT400031687	Potato	extracellular	42.86	46.31
PGSC0003DMT400081328	Potato	extracellular	42.86	45.1
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	16.36	44.89
PGSC0003DMT400018848	Potato	extracellular	41.61	43.98
PGSC0003DMT400030711	Potato	extracellular, golgi, nucleus	42.24	41.98
PGSC0003DMT400007594	Potato	extracellular	38.92	37.98
PGSC0003DMT400036866	Potato	extracellular, golgi	37.47	37.17
PGSC0003DMT400041391	Potato	cytosol	11.39	33.13
PGSC0003DMT400065330	Potato	nucleus	13.04	30.73
PGSC0003DMT400033674	Potato	extracellular, plasma membrane	21.53	21.85

Protein Annotations

EntrezGene:102584705	Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005575	GO:GO:0005618	GO:GO:0005623	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	GO:GO:0016798	GO:GO:0030312	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M1AWV7
PFAM:PF00295	EnsemblPlantsGene:PGSC0003DMG402012324	PGSC:PGSC0003DMG402012324	EnsemblPlants:PGSC0003DMT400032104	PANTHER:PTHR31339	PANTHER:PTHR31339:SF7
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	UniParc:UPI00029492D9	RefSeq:XP_006343936.1	SEG:seg

Description

Polygalacturonase [Source:PGSC_GENE;Acc:PGSC0003DMG402012324]

Coordinates

chr8:+:55182424..55188422

Molecular Weight (calculated)

52831.9 Da

IEP (calculated)

4.930

GRAVY (calculated)

-0.054

Length

483 amino acids

Sequence
(BLAST)

001: MEFPLSTLTH IPAIRRVLLL AVVILTAFGN VHGRHKVHKW ETVEYSAISC RAHTASLTDF GGIGDGTTLN TDAFRTAVDH LSQFQSDGGS MLYVPAGKWL
101: TGSFNLTSHF TLYLDKDAVL LASQDENDYP VIAPLPSYGR GRDTDGGRFI SLVFGSNLTD VVITGENGTI DGQGQLWWDK FHNGELKFTR PYLIEIMYSD
201: NIQISSLTLI NSPSWNVHPV YCSNIIIQGI TILAPVRSPN TDGINPDSCI NTRIEDCYIV SGDDCIAVKS GWDEYGIAFG MPTKQLAIRR ITCISPTSAT
301: IALGSEMSGG IQDVRAEDIV AINTESAVRI KTAVGRGGYV KDIYVRGVTM KTMKYVFWMT GDYGSHPDNN YDPNALPVIE NINYRDMVAE NVTIAAKLAG
401: ISGDPFTGIC ISNVTIEMAP KAKKLFWNCT DISGISSGVV PQPCDLLPDQ GTEYASPCNF PTESLPIDDM EIQTCSCRKK IYN

Best Arabidopsis Sequence Match ( AT4G23500.1 )
(BLAST)

001: MTSLSTAGYL LLLLLLPISY DGGFIGAADA EHDLRATDLH NHRHRRHRNH HRGEEFEYSA ISCRAYSASL DEFGAVGDGV TSNTAAFRDA VSQLSRFADY
101: GGSLLFVPAG RWLTGNFNLT SHFTLFLHRD AVILASQEES DYEVIEPLPS YGRGRDTDGG RFISLLFGSN LTDVVITGEN GTIDGQGEPW WGKFKRGELK
201: YTRPYLIEIM HSDGIQISNL TFLNSPSWHI HPVYSSNIYI QGLTILAPVT VPNTDGINPD SCTNTRIEDC YIVSGDDCIA VKSGWDQYGI NYGMPTKQLL
301: IRRLTCISPD SAVIALGSEM SGGIEDVRAE DIVAINSESG IRIKTAIGRG GYVKDVYVRG MTMMTMKYVF WMTGSYGSHP DDHYDPKALP VIQNINYQDM
401: VAENVTMPAQ LAGISGDQFT GICISNVTIT LSKKPKKVLW NCTDVSGYTS GVTPQPCQLL PEKQPGTVVP CNFPEDPIPI DEVKLQRCYS RRRNM

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O81746]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.