Factsheet for GSMUA_Achr4P05580_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 2
plasma membrane 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	69.55	69.55
GSMUA_Achr11P...	Banana	cytosol	67.31	68.85
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	41.35	64.18
CDY69951	Canola	cytosol	22.44	55.56
CDY70893	Canola	cytosol	62.82	54.75
CDY69255	Canola	cytosol	62.82	52.13
TraesCS7A01G019700.1	Wheat	cytosol	20.19	51.22
TraesCS7A01G019900.1	Wheat	cytosol	43.91	51.12
TraesCS7A01G019500.1	Wheat	cytosol	42.95	50.0
Os06t0106800-01	Rice	extracellular	76.28	49.07
EER89047	Sorghum	extracellular, vacuole	77.24	48.69
Zm00001d035899_P001	Maize	extracellular	74.36	47.74
GSMUA_Achr11P...	Banana	extracellular	70.83	46.43
CDY10899	Canola	cytosol	14.1	45.83
PGSC0003DMT400094734	Potato	cytosol	15.38	45.71
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	69.55	45.3
TraesCS7D01G016300.2	Wheat	extracellular	70.83	45.19
PGSC0003DMT400055769	Potato	extracellular	67.63	44.23
KRH48075	Soybean	extracellular	68.27	44.19
KRH59960	Soybean	nucleus	68.91	43.7
KRH06594	Soybean	mitochondrion	68.59	43.58
PGSC0003DMT400000538	Potato	extracellular	66.35	43.58
VIT_02s0025g00260.t01	Wine grape	extracellular	66.99	43.54
Solyc01g094970.2.1	Tomato	extracellular	56.73	43.49
KRH41230	Soybean	nucleus	68.59	43.32
CDY65355	Canola	extracellular	65.38	43.22
CDY44105	Canola	cytosol, nucleus, plasma membrane	62.5	43.14
KRH00832	Soybean	nucleus	66.35	42.77
KRH48076	Soybean	extracellular	64.74	42.62
Solyc05g049980.2.1	Tomato	extracellular	66.35	42.59
KRH40394	Soybean	extracellular, nucleus	66.03	42.56
Bra007609.1-P	Field mustard	extracellular	64.1	42.55
CDY48913	Canola	extracellular	64.1	42.46
TraesCS7A01G019400.1	Wheat	extracellular, plastid, vacuole	70.51	42.23
PGSC0003DMT400032104	Potato	extracellular	65.06	42.03
TraesCSU01G066000.1	Wheat	golgi, unclear	70.19	41.63
Solyc08g081480.2.1	Tomato	extracellular	64.42	41.61
AT4G23500.1	Thale cress	extracellular, plasma membrane	63.46	40.0
Bra013697.1-P	Field mustard	extracellular, plasma membrane	63.14	39.96
Bra019299.1-P	Field mustard	extracellular, plasma membrane	62.82	39.76
GSMUA_Achr8P06180_001	Banana	extracellular	48.72	38.68
GSMUA_AchrUn_...	Banana	extracellular	48.08	38.17
CDY10898	Canola	cytosol	6.09	37.25
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	47.76	36.7
GSMUA_Achr4P08470_001	Banana	extracellular	47.12	35.77
AT3G61490.4	Thale cress	cytosol, plastid	66.03	34.97
GSMUA_Achr8P19900_001	Banana	cytosol	45.83	34.46
GSMUA_Achr6P14280_001	Banana	cytosol	43.91	34.08
GSMUA_Achr10P...	Banana	cytosol	44.87	33.98
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	18.91	33.52
GSMUA_Achr2P08050_001	Banana	cytosol, extracellular, golgi, mitochondrion	46.47	32.81
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	42.31	31.28
GSMUA_Achr11P...	Banana	extracellular, vacuole	40.71	28.54
GSMUA_Achr3P10280_001	Banana	mitochondrion	43.27	28.18
GSMUA_Achr9P18190_001	Banana	mitochondrion	43.27	27.49
GSMUA_Achr5P22120_001	Banana	extracellular	41.67	26.42
Solyc06g030520.1.1	Tomato	cytosol	9.62	26.32
GSMUA_Achr11P...	Banana	mitochondrion	41.35	26.27
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	41.03	25.65
PGSC0003DMT400065330	Potato	nucleus	16.03	24.39
GSMUA_Achr11P...	Banana	extracellular	41.67	23.68
GSMUA_Achr11P...	Banana	cytosol	41.03	19.34
KRH33610	Soybean	plastid	8.97	15.56
GSMUA_Achr3P11090_001	Banana	extracellular	19.23	12.93

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	EnsemblPlantsGene:GSMUA_Achr4G05580_001	EnsemblPlants:GSMUA_Achr4P05580_001
EnsemblPlants:GSMUA_Achr4T05580_001	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0SLC5	PFAM:PF00295	PANTHER:PTHR31339
PANTHER:PTHR31339:SF7	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	UniParc:UPI0002949184	SEG:seg

Description

Probable polygalacturonase [Source:GMGC_GENE;Acc:GSMUA_Achr4G05580_001]

Coordinates

chr4:-:4296562..4300221

Molecular Weight (calculated)

34001.1 Da

IEP (calculated)

4.792

GRAVY (calculated)

-0.133

Length

312 amino acids

Sequence
(BLAST)

001: MNAWPIIDPL PSYGRGRDAA GGRYSSLIGG SNLTDVIITG DNGTIDGQGA FWWSKFHGHK LKYTRGYLIE LMHSDQIFIS NLTLLNSPSW NIHPVYSSNI
101: VVSGITILAP VHSPNTDGIN PDSCSNVRIE DCYIVSGDDC VAIKSGWDEY GIAYGMPSQH ITAVGRGAYV KDVYVRRMYL STMKWVFWMT GNYKSHPDDK
201: FDPNAIPVVD GISYSEVTAY NVTMAARLEG IPNAPFTGIC ISNVTVELRK ARKLPWYCAD VEGVSSGVSP AACASLADQG DGAQPCPFPT DASPMDDVQL
301: QECTYFPTDI ST

Best Arabidopsis Sequence Match ( AT3G61490.4 )
(BLAST)

001: MSLFAITSAF SEDNVTAISS NQLIPLNDKI IANLIRSPNT QTKSLNLASS FLHSLSAYKY SYSLLLTSSS NHLASPHSQR AHKSQVILFL SLKHKHTQMY
101: KQTHHFCFQI YKTMKNILAC IVTIITLSNL ITISQGRRVS QSFETFEYTA IICRSHSASI TEYGGVGDGK TLNTKAFQSA VDHLSQYSSE GGAQLFVPAG
201: KWLTGSFNLT SHFTLFLHKD AILLAAQDLN EYPILKALPS YGRGRDAAGG RFASLIFGTN LSDVIITGNN GTIDGQGSFW WQKFHGGKLK YTRPYLIELM
301: FSDTIQISNL TFLDSPSWNI HPVYSSNIIV KGVTIIAPVK SPNTDGINPD SCTNTRIEDC YIISGDDCIA VKSGWDEYGI SFGMPTKHLV IRRLTCISPY
401: SAAIALGSEM SGGIEDVRAE DITAYQTESG VRIKTAVGRG AFVKNIYVKG MNLHTMKWVF WMTGNYKAHA DSHYDPHALP EITGINYRDI VAENVSMAGR
501: LEGISGDPFT GICISNATIS MAAKHKKAIW MCSDVEGVTS GVDPKPCDLL DGQESETTKK KMIDGGCDFP TDVLEIDNVE LKTCSYQMS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS88]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.