Factsheet for GSMUA_Achr5P00100_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 1
plasma membrane 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	extracellular, vacuole	73.7	69.89
Os12t0554800-01	Rice	cytosol, extracellular	67.3	66.98
GSMUA_Achr11P...	Banana	extracellular	85.55	65.76
Os11t0658800-01	Rice	extracellular	67.3	63.25
KXG29050	Sorghum	extracellular	67.54	63.19
TraesCS5B01G097100.2	Wheat	extracellular	67.06	63.03
TraesCS5D01G102900.1	Wheat	unclear	66.59	62.58
TraesCS4D01G146700.1	Wheat	extracellular, golgi, vacuole	67.3	62.14
Zm00001d023813_P001	Maize	extracellular, vacuole	67.3	61.61
TraesCS4B01G144700.2	Wheat	extracellular, golgi, vacuole	66.35	61.27
TraesCS4A01G168800.1	Wheat	extracellular, golgi, vacuole	65.17	60.18
VIT_05s0077g01760.t01	Wine grape	extracellular, vacuole	64.22	59.56
TraesCS5A01G090800.2	Wheat	extracellular, golgi, mitochondrion, plastid	66.82	59.49
KRH37050	Soybean	extracellular, vacuole	63.03	58.85
KRH50791	Soybean	extracellular	61.14	57.46
KRH02302	Soybean	extracellular	61.14	57.46
VIT_07s0005g00890.t01	Wine grape	extracellular	64.93	57.44
KRH69264	Soybean	extracellular	61.85	57.36
KRH12027	Soybean	extracellular, vacuole	63.51	56.9
Zm00001d048696_P001	Maize	extracellular	66.35	56.68
KRH31843	Soybean	extracellular	61.14	56.58
GSMUA_Achr8P06180_001	Banana	extracellular	52.61	56.49
HORVU5Hr1G023800.7	Barley	plastid	68.01	55.95
GSMUA_AchrUn_...	Banana	extracellular	51.42	55.22
PGSC0003DMT400018848	Potato	extracellular	59.72	55.14
CDY33922	Canola	extracellular	57.58	54.73
Solyc06g009790.2.1	Tomato	extracellular	59.24	54.7
CDY08036	Canola	cytosol, nucleus, vacuole	48.58	54.38
Bra037429.1-P	Field mustard	extracellular	57.11	54.28
CDY54633	Canola	extracellular	57.58	54.24
CDX74085	Canola	cytoskeleton, cytosol, vacuole	48.82	54.21
CDX82390	Canola	extracellular	57.58	54.12
PGSC0003DMT400081328	Potato	extracellular	58.77	54.03
Bra001642.1-P	Field mustard	vacuole	57.58	53.88
AT3G16850.1	Thale cress	vacuole	57.82	53.63
Bra022182.1-P	Field mustard	extracellular, golgi	57.35	53.42
VIT_05s0077g01740.t01	Wine grape	nucleus	29.86	53.39
AT5G49215.1	Thale cress	extracellular, vacuole	56.64	53.23
CDX92101	Canola	extracellular, golgi	57.35	53.19
KRG96478	Soybean	endoplasmic reticulum, extracellular	60.19	52.7
AT3G06770.5	Thale cress	extracellular	55.69	52.57
CDX95899	Canola	extracellular	56.16	52.32
Solyc09g075460.2.1	Tomato	extracellular	59.48	52.29
Bra001215.1-P	Field mustard	extracellular	55.45	52.12
Bra020656.1-P	Field mustard	extracellular, plasma membrane	57.58	51.7
KRH68221	Soybean	extracellular	60.43	51.31
CDY56436	Canola	extracellular, vacuole	57.35	51.05
CDY05643	Canola	extracellular, plasma membrane, plastid	57.82	51.05
GSMUA_Achr6P14280_001	Banana	cytosol	46.68	49.01
GSMUA_Achr4P08470_001	Banana	extracellular	47.39	48.66
CDX86247	Canola	plasma membrane, plastid	56.87	47.9
GSMUA_Achr10P...	Banana	cytosol	45.73	46.84
GSMUA_Achr11P...	Banana	cytosol	73.46	46.83
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	45.02	46.8
GSMUA_Achr8P19900_001	Banana	cytosol	45.5	46.27
GSMUA_Achr2P08050_001	Banana	cytosol, extracellular, golgi, mitochondrion	45.97	43.89
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	18.01	43.18
GSMUA_Achr4P05580_001	Banana	cytosol	31.28	42.31
GSMUA_Achr11P...	Banana	cytosol	31.04	41.99
GSMUA_Achr11P...	Banana	cytosol	29.86	41.31
GSMUA_Achr11P...	Banana	extracellular	46.45	41.18
GSMUA_Achr11P...	Banana	mitochondrion	43.13	37.07
GSMUA_Achr3P10280_001	Banana	mitochondrion	41.71	36.74
GSMUA_Achr9P18190_001	Banana	mitochondrion	42.18	36.25
GSMUA_Achr5P22120_001	Banana	extracellular	41.0	35.16
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	40.76	34.47
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	15.17	31.84
GSMUA_Achr3P11090_001	Banana	extracellular	23.7	21.55

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	EnsemblPlantsGene:GSMUA_Achr5G00100_001	EnsemblPlants:GSMUA_Achr5P00100_001	EnsemblPlants:GSMUA_Achr5T00100_001
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0SUD9	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF5
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	UniParc:UPI000295EA16
SEG:seg	:	:	:	:	:

Description

Probable polygalacturonase [Source:GMGC_GENE;Acc:GSMUA_Achr5G00100_001]

Coordinates

chr5:-:58190..61149

Molecular Weight (calculated)

45901.8 Da

IEP (calculated)

4.918

GRAVY (calculated)

-0.020

Length

422 amino acids

Sequence
(BLAST)

001: MSRSTPRPHS VTITEFGAVG DGVTLNTVAF QNAVFYVRSF ADKGGAQLYV PKGRWLTGSF DLTSHLTLFL DKDAVIIGSQ DASQWPPVEP LPSYGRGIDL
101: PGERHRSLIN GYNLIDVVIT GNNGAIDGQG SVWWEWFRSH TLNYSRPHLL ELVSSSDIVV SNLTFLNPPA WSIHPVYSSN VTIQNIIIHA SSDSPYTDGI
201: VPDSCSNFHI EDCSISVGHD AIVLKSGWDS YGISFGKPSS NIQINNVHLQ TSLGSALAFG SEMSGGISDV RVEHLYVRNS HTGINFKTTR GRGGYIEDIV
301: ISDVKMENVH EAIQFTGYCG AHPDDQYDPD VLPVVRRVTI KDVVGTNISN AGVFSGIDHD PFTAICLANI SLPITSDLSD PWTCSNVAGF SDSVFPQPCL
401: DLSLNSSLFC FSLETFRAIA EI

Best Arabidopsis Sequence Match ( AT3G16850.1 )
(BLAST)

001: MKMPVALVWL LAFTILLISG EGNNAICKEN FKLDPRPHSV SILEFGAVGD GKTLNTIAFQ NAVFYLKSFA DKGGAQLYVP PGKWLTGSFN LTSHLTLFLE
101: KGATILASPD PSHWDVVSPL PSYGRGIELP GKRYRSLING DNLIDVVITG ENGTFDGQGA AWWEWLESGS LNYSRPHIIE FVSSKHILIS NLTFLNAPAI
201: NIHPVYCSQI HIRKVLIETS VDSPHVLGVA PDSSDNVCIE DSTINVGHDA VSLKSGWDQY GIHYGRPTTA VHIRNLRLKS PTGAGISFGS EMSGGVSDVT
301: VERLNIHSSL IGVAFRTTRG RGGYIRNITI SDVDLTSVDT AIVANGHTGS HPDDKFDRDA LPVVTHIVMR NFTGVDIGVA GNLTGIGESP FTSICLADIH
401: LQTRSEESWI CSNVSGFSDD VSPEPCQELM SSPSSCFAGG SIYEGDATAQ SYYSW

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94C86]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.