Factsheet for Bra037429.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86247	Canola	plasma membrane, plastid	98.42	87.23
AT5G49215.1	Thale cress	extracellular, vacuole	86.71	85.75
Bra020656.1-P	Field mustard	extracellular, plasma membrane	88.29	83.4
Bra001215.1-P	Field mustard	extracellular	72.52	71.71
KRH37050	Soybean	extracellular, vacuole	65.32	64.16
VIT_05s0077g01760.t01	Wine grape	extracellular, vacuole	65.32	63.74
KRH02302	Soybean	extracellular	63.74	63.03
KRH50791	Soybean	extracellular	63.74	63.03
KRH12027	Soybean	extracellular, vacuole	65.99	62.21
Bra022182.1-P	Field mustard	extracellular, golgi	60.81	59.6
Bra001642.1-P	Field mustard	vacuole	59.68	58.76
PGSC0003DMT400081328	Potato	extracellular	59.23	57.3
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	54.28	57.11
PGSC0003DMT400018848	Potato	extracellular	58.56	56.89
Solyc06g009790.2.1	Tomato	extracellular	57.88	56.24
Os12t0554800-01	Rice	cytosol, extracellular	53.15	55.66
Solyc09g075460.2.1	Tomato	extracellular	59.23	54.79
Os11t0658800-01	Rice	extracellular	55.41	54.79
TraesCS5B01G097100.2	Wheat	extracellular	55.41	54.79
VIT_05s0077g01740.t01	Wine grape	nucleus	28.83	54.24
TraesCS4D01G146700.1	Wheat	extracellular, golgi, vacuole	55.63	54.05
TraesCS5D01G102900.1	Wheat	unclear	54.5	53.9
KXG29050	Sorghum	extracellular	54.5	53.66
TraesCS4A01G168800.1	Wheat	extracellular, golgi, vacuole	55.18	53.61
TraesCS4B01G144700.2	Wheat	extracellular, golgi, vacuole	54.95	53.39
Zm00001d023813_P001	Maize	extracellular, vacuole	54.05	52.06
TraesCS5A01G090800.2	Wheat	extracellular, golgi, mitochondrion, plastid	54.95	51.48
GSMUA_Achr11P...	Banana	extracellular, vacuole	49.77	49.66
Zm00001d048696_P001	Maize	extracellular	54.05	48.58
HORVU5Hr1G023800.7	Barley	plastid	54.95	47.56
Bra003485.1-P	Field mustard	extracellular, golgi	45.95	44.54
Bra007662.1-P	Field mustard	extracellular, plasma membrane	45.27	43.7
GSMUA_Achr11P...	Banana	extracellular	53.6	43.35
Bra013734.1-P	Field mustard	extracellular, vacuole	43.24	43.24
Bra019264.1-P	Field mustard	extracellular, vacuole	43.02	42.35
Bra028511.1-P	Field mustard	extracellular	42.57	42.28
Bra018004.1-P	Field mustard	cytosol	38.96	39.59
Bra007609.1-P	Field mustard	extracellular	41.89	39.57
Bra011440.1-P	Field mustard	extracellular	42.12	39.45
Bra013697.1-P	Field mustard	extracellular, plasma membrane	43.69	39.35
Bra019299.1-P	Field mustard	extracellular, plasma membrane	43.47	39.15
Bra018023.1-P	Field mustard	extracellular	40.54	38.38
Bra037005.1-P	Field mustard	extracellular	40.77	37.95
GSMUA_Achr11P...	Banana	cytosol	54.73	36.71
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	38.06	33.67
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	37.16	32.54
Bra032138.1-P	Field mustard	cytosol	41.22	22.88
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	21.85	20.29
Bra007626.1-P	Field mustard	mitochondrion	22.97	17.56

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra037429	EnsemblPlants:Bra037429.1	EnsemblPlants:Bra037429.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4F8L7	PFAM:PF00295	PANTHER:PTHR31339
PANTHER:PTHR31339:SF15	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI000253F9FC
SEG:seg	:	:	:	:	:

Description

AT5G49215 (E=1e-211) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA06:+:21508033..21509963

Molecular Weight (calculated)

48119.5 Da

IEP (calculated)

4.961

GRAVY (calculated)

-0.019

Length

444 amino acids

Sequence
(BLAST)

001: MPVALVLLLA LSCLIQSNGA GNVCDLGRRP SSRPHSVSIL EFGAVGDGKT LNTLAFQNAV FYLKSFADKG GAQLYVPPGR WLTGSFNLTS HLTLFLEKDA
101: VILASQDPSH WQVADPLPSY GRGIDLTGKR YMSLINGYML HDVVVTGDNG TIDGQGLFWW DRFNSHSLKY SRPHLVEFVS SENVIVSNLT FLNAPEYTIH
201: SVYCSHVYIH RVTANTSPES PYTVGIVPDS SDNVCIQDST INMGYDAISL KSGWDEYGIS YARPTANVQI RGVHLRAASG SSISFGSEMS GGISDVVVLD
301: AYMHNSLSGI AFRTTKGRGG YIKEIDVSNI HMVNVGTAFL ANGSFGTHPD SGFDENAFPL VSHIRLHDIV GENISIAGDF FGTEESPFTS VVLSNISLSM
401: TNSGSPDDDS WRCLYVEGSS ESVVPEPCYE LMSFESSYGR AEAL

Best Arabidopsis Sequence Match ( AT5G49215.2 )
(BLAST)

001: MPVALVLLLT LSSVILINGR SYGVGNICDR GRRPSERPHS VKITDFGAVG DGKTLNTLAF QNAVFYLKSF ADKGGAQLYV PPGRWLTGSF NLTSHLTLFL
101: EKDAVILASQ DPSHWQVTDA LPSYGRGIDL PGKRYMSLIN GDMLHDVVVT GDNGTIDGQG LVWWDRFNSH SLEYSRPHLV EFVSAENVIV SNLTFLNAPA
201: YTIHSVYCRN LYIHRVTANT CPESPYTIGI VPDSSENVCI QESSINMGYD AISLKSGCDE YGLSYARPTA NVQIRNVYLR AASGSSISFG SEMSGGISDV
301: EVSDAHIHNS LSGIAFRTTN GRGGYIKEID ISNIHMVNVG TAFLANGSFG THPDSGFDEN AYPLVSHIRL HDIVGENIST AGYFFGTKES PFTSILLSNI
401: SLSIKNSASP ADSWQCSYVD GSSEFVVPEP CLELKSFDSY YGRAEAL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8RX04]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.