Factsheet for Bra028511.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67513	Canola	extracellular	99.33	99.33
AT5G41870.1	Thale cress	extracellular	89.71	89.31
GSMUA_Achr8P19900_001	Banana	cytosol	61.97	66.75
KRG99037	Soybean	nucleus	65.55	66.29
KRH73576	Soybean	extracellular	40.72	65.94
KRH14547	Soybean	extracellular	65.77	65.92
KRH45957	Soybean	extracellular	65.1	65.69
Bra013734.1-P	Field mustard	extracellular, vacuole	65.1	65.54
GSMUA_Achr10P...	Banana	cytosol	60.18	65.29
VIT_02s0025g01330.t01	Wine grape	extracellular	64.88	64.88
PGSC0003DMT400031687	Potato	extracellular	64.65	64.65
GSMUA_Achr6P14280_001	Banana	cytosol	57.72	64.18
Bra019264.1-P	Field mustard	extracellular, vacuole	64.43	63.86
Os01t0618900-01	Rice	cytosol, extracellular	46.53	63.22
GSMUA_Achr4P08470_001	Banana	extracellular	57.27	62.29
Solyc08g082170.2.1	Tomato	nucleus	64.43	61.67
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	55.7	61.33
EES20030	Sorghum	extracellular	57.49	58.54
EES01085	Sorghum	extracellular	58.39	58.39
TraesCS3B01G253000.1	Wheat	extracellular	58.61	58.22
Os05t0587000-01	Rice	extracellular	57.94	57.81
Os02t0256100-01	Rice	extracellular	57.27	57.79
EES04867	Sorghum	extracellular, plasma membrane	57.72	57.59
TraesCS3D01G230000.1	Wheat	extracellular	57.94	57.56
Zm00001d053395_P001	Maize	extracellular	57.94	57.43
Zm00001d009717_P001	Maize	extracellular	54.59	54.71
Zm00001d011369_P001	Maize	extracellular	54.14	54.38
Bra037005.1-P	Field mustard	extracellular	52.35	49.06
Bra011440.1-P	Field mustard	extracellular	51.9	48.95
HORVU3Hr1G054810.4	Barley	extracellular	57.49	47.5
Bra022182.1-P	Field mustard	extracellular, golgi	45.41	44.81
Bra003485.1-P	Field mustard	extracellular, golgi	45.86	44.76
Bra007662.1-P	Field mustard	extracellular, plasma membrane	44.74	43.48
Bra001642.1-P	Field mustard	vacuole	43.62	43.24
Bra037429.1-P	Field mustard	extracellular	42.28	42.57
Bra001215.1-P	Field mustard	extracellular	42.73	42.54
Bra020656.1-P	Field mustard	extracellular, plasma membrane	43.62	41.49
Bra018004.1-P	Field mustard	cytosol	40.04	40.96
Bra007609.1-P	Field mustard	extracellular	42.95	40.85
Bra013697.1-P	Field mustard	extracellular, plasma membrane	43.18	39.15
Bra018023.1-P	Field mustard	extracellular	40.94	39.02
Bra019299.1-P	Field mustard	extracellular, plasma membrane	42.73	38.74
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	43.18	38.07
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	42.28	37.65
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	24.38	22.8
Bra032138.1-P	Field mustard	cytosol	39.82	22.25
Bra007626.1-P	Field mustard	mitochondrion	22.37	17.21

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra028511	EnsemblPlants:Bra028511.1	EnsemblPlants:Bra028511.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4EI96	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF3
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM
UniParc:UPI00025433EE	SEG:seg	:	:	:	:

Description

AT5G41870 (E=2e-232) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA02:-:802923..804614

Molecular Weight (calculated)

48135.3 Da

IEP (calculated)

7.419

GRAVY (calculated)

-0.080

Length

447 amino acids

Sequence
(BLAST)

001: MGISRLPISV FVFFLLSAHH HLSLGDPITC SGIVPMKHRS QMLSISDFGA VGDGTTLNTN AFNAAIDRIR NAKNVSVGTL LYVPRGVYLT QSFNLTSHMT
101: LYLAHGAVIK ALQDTEKWPL IDPLPSYGRG RERPGQRYIS FIHGDGLTDV VITGKNGTID GAGEPWWNMW RHGTLKFTRP GLVEFKNSTD ILISHVVLQN
201: SPFWTLHPVY CSGVVVHHVT ILAPTDSPNT DGIDPDSSSN VCIEDSYIST GDDLVAVKSG WDEYGIAYNR PSRDITIRRI TGSSPFAGIA IGSETSGGIQ
301: NVTVENITLY NSGIGVHIKT NIGRGGSIQG ITVSGVHLEK VRTGIKISGD TGDHPDDKFN VSALPVVRGI TIKNVWGIKV ERAGMVQGLK DAPFTNLCFS
401: NVTFTGTKGS PIWKCSDVVG AAEKVNPTAC PELTSTSQQG GYCENQA

Best Arabidopsis Sequence Match ( AT5G41870.1 )
(BLAST)

001: MKISQAPISV FVLFLLSTVL PHHLSLGAPI TCSGIVPMKH RNEMLSISDF GAVGDGKTLN TKAFNSAIDR IRNSNNSNEG TLLYVPRGVY LTQSFNLTSH
101: MTLYLADGAV IKAVQDTEKW PLTDPLPSYG RGREHPGRRY ISFIHGDGLN DVVITGRNGT IDGQGEPWWN MWRHGTLKFT RPGLIEFNNS TNILVSHVVL
201: QNSPFWTLHP VYCSNVVVHH VTILAPTDSY NTDGIDPDSS SNVCIEDSYI STGDDLVAVK SGWDEYGIAY NRPSRDITIR RITGSSPFAG IAIGSETSGG
301: IQNVTVENIT LYNSGIGIHI KTNIGRGGSI QGITISGVYL EKVRTGIKIS GDTGDHPDDK FNTSALPIVR GITIKNVWGI KVERAGMVQG LKDSPFTNLC
401: FSNVTLTGTK RSPIWKCSDV VGAADKVNPT PCPELSATTQ QGGSCENQS

Arabidopsis Description

At5g41870 [Source:UniProtKB/TrEMBL;Acc:Q9FJ27]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.