Factsheet for Bra032138.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39678	Canola	extracellular	58.62	98.12
CDY20264	Canola	extracellular	58.62	98.12
AT2G23900.1	Thale cress	extracellular	54.62	91.61
Bra018004.1-P	Field mustard	cytosol	40.88	74.83
Bra018023.1-P	Field mustard	extracellular	41.75	71.22
KRG91587	Soybean	cytosol, extracellular, plastid	19.5	63.93
KRH35240	Soybean	extracellular	37.0	62.84
KRH35239	Soybean	extracellular, plasma membrane, plastid	37.5	62.5
KRH38380	Soybean	extracellular	36.38	61.13
KRH35238	Soybean	extracellular	35.25	60.52
KRH08861	Soybean	extracellular	35.75	59.96
Bra007609.1-P	Field mustard	extracellular	34.0	57.87
Bra019299.1-P	Field mustard	extracellular, plasma membrane	34.75	56.39
Solyc03g007950.2.1	Tomato	extracellular	32.38	55.46
Bra013697.1-P	Field mustard	extracellular, plasma membrane	34.12	55.38
PGSC0003DMT400024595	Potato	cytosol	31.75	53.25
VIT_16s0050g01120.t01	Wine grape	cytosol	12.38	52.94
Bra013734.1-P	Field mustard	extracellular, vacuole	24.0	43.24
Bra019264.1-P	Field mustard	extracellular, vacuole	23.75	42.13
Bra001642.1-P	Field mustard	vacuole	23.62	41.91
Bra003485.1-P	Field mustard	extracellular, golgi	23.88	41.7
Bra022182.1-P	Field mustard	extracellular, golgi	23.5	41.5
Bra037429.1-P	Field mustard	extracellular	22.88	41.22
Bra007662.1-P	Field mustard	extracellular, plasma membrane	23.5	40.87
Bra028511.1-P	Field mustard	extracellular	22.25	39.82
Bra020656.1-P	Field mustard	extracellular, plasma membrane	23.38	39.79
Bra011440.1-P	Field mustard	extracellular	23.38	39.45
Bra037005.1-P	Field mustard	extracellular	23.38	39.2
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	23.75	37.85
Bra001215.1-P	Field mustard	extracellular	20.75	36.97
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	22.25	35.11
VIT_16s0050g01110.t01	Wine grape	extracellular, golgi	37.38	28.45
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	14.0	23.43
Bra007626.1-P	Field mustard	mitochondrion	12.0	16.52

Protein Annotations

Gene3D:2.160.20.10	Gene3D:3.40.50.1000	MapMan:50.3.2	EnsemblPlantsGene:Bra032138	EnsemblPlants:Bra032138.1	EnsemblPlants:Bra032138.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_28	InterPro:HAD-SF_hydro_IG_5-nucl	InterPro:HAD-like_sf	InterPro:HAD_sf
InterPro:IPR012334	InterPro:IPR023214	UniProt:M4ETK6	PFAM:PF00295	PFAM:PF05761	PANTHER:PTHR31339
PANTHER:PTHR31339:SF17	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	SUPFAM:SSF56784	TIGRFAMs:TIGR02244
UniParc:UPI00025447C5	SEG:seg	:	:	:	:

Description

AT2G23900 (E=2e-245) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA04:+:10658692..10665239

Molecular Weight (calculated)

89838.1 Da

IEP (calculated)

8.183

GRAVY (calculated)

-0.178

Length

800 amino acids

Sequence
(BLAST)

001: MPKMNPQGIY VDKNLRLDNI QVYGFDYDYT LAHYSSDLQS LIYDLAKQHM VNDFRYPESC MKFKYDPTFP IRGLYYDKQK GCLMKLDFFG SIEPYGCYFC
101: RRKLSRKELE NMYGTRHMGR EQARVLVGLM DFFCFSEACL IADMVQYFVD AKLEFDASYI YNDVNRAIQH VHRSGLVHRG ILADPTRYLL KNGQLLRFLR
201: SLKDKGKKLF LMTNSPYHFV DGGMRYLMEE SFGLRDSWRD LFDVVIAKAN KPEFYTSEHP FRCYDEGRDT LAFTKVDSFH PDKIYYHGCL KSFLQITKWR
301: GPEVIYFGDH LFSDLRGPSK AGWRTVAIIH ELEMTRTSFV IVVVLAICSF QMMESSPDLA NKVKANNIQY DAINCRKHSA VITEFGAVGD GKTSNTKAFK
401: EAITKLAPKA ADGGVQLIVP PGKWLTGSFN LTSHFTLFIQ KDATILASQD ESEYPVVAPL PSYGQGRDAA GPTFASLISG TNLTDVVITG NNGTINGQGK
501: YWWVKYRSGG FKNITRPYTL ELVFSKDVQI SNITIVDSPA WNIHPVYCTN VIVKGVTILA PIDSPNTDGI NPDSCTNTLI EDCFVVSGDD CIAVKSGWDQ
601: FGIKVGMPTQ QLSIRRLTCI SPDSAGIALG SEMSGGIKDV RMEDITLLQT QSAIRIKTAV GRGGYVKDIF ARRFTMKTMK YVFWMSGAYN QHPASGFDPK
701: AMPEITNINY RDMTADNVTQ PARLDGFTND PFTKICMSNI NIVLAAEPKK LLWNCTAISG VSSKVTPKPC SLLPENAPVD CAFPVDKIPI ESVVLNKCSA

Best Arabidopsis Sequence Match ( AT2G23900.1 )
(BLAST)

001: MEFSINPSTL KMIRTSFCIL VVLAISSFSM MEARDLASKG KTNIEYMALN CRKHTAVLTE FGAVGDGKTS NTKAFKEAIT KLAPKAADGG VQLIVPPGKW
101: LTGSFNLTSH FTLFIQKGAT ILASQDESEY PVVAPLPSYG QGRDAAGPTF ASLISGTNLT DVVITGNNGT INGQGKYWWV KYRSGGFKGI TRPYTIEIIF
201: SQNVQISNIT IIDSPAWNIH PVYCNNVIVK GVTILAPIDS PNTDGINPDS CTNTLIEDCY VVSGDDCIAV KSGWDQFGIK VGMPTQQLSI RRLTCISPDS
301: AGIALGSEMS GGIKDVRIED ITLLQTQSAI RIKTAVGRGG YVKDIFARRF TMKTMKYVFW MSGAYNQHPA SGFDPKAMPV ITNINYRDMT ADNVTQPARL
401: DGFKNDPFTK ICMSNIKIDL AAEPKKLLWN CTSISGVSSK VTPKPCSLLP EKGAPVDCAF PVDKIPIESV VLNKCSA

Arabidopsis Description

Glycoside hydrolase family 28 protein/polygalacturonase family protein [Source:UniProtKB/TrEMBL;Acc:Q1PF10]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.