Factsheet for Bra039462.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, extracellular

Predictor Summary:

plastid 4
extracellular 2
plasma membrane 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27797	Canola	extracellular, mitochondrion, plastid	99.6	99.8
CDY41934	Canola	extracellular, mitochondrion, plastid	99.4	99.4
AT3G42950.1	Thale cress	extracellular, golgi	87.05	90.29
GSMUA_Achr3P10280_001	Banana	mitochondrion	67.53	70.77
GSMUA_Achr9P18190_001	Banana	mitochondrion	68.92	70.47
GSMUA_Achr5P22120_001	Banana	extracellular	67.73	69.11
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	68.33	67.65
Solyc03g117750.2.1	Tomato	extracellular, golgi	64.54	66.53
PGSC0003DMT400036866	Potato	extracellular, golgi	64.54	66.53
Os02t0781000-01	Rice	extracellular	37.65	66.32
Zm00001d052103_P001	Maize	plasma membrane	63.35	64.24
TraesCS6B01G371200.2	Wheat	mitochondrion	63.35	64.24
EES05901	Sorghum	extracellular, golgi	63.74	64.0
TraesCS6A01G340000.1	Wheat	mitochondrion	62.75	63.64
TraesCS6D01G320600.1	Wheat	mitochondrion	62.35	63.23
GSMUA_Achr11P...	Banana	mitochondrion	61.75	63.14
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	61.16	61.52
Bra013734.1-P	Field mustard	extracellular, vacuole	38.45	43.47
Bra019264.1-P	Field mustard	extracellular, vacuole	38.25	42.57
Bra028511.1-P	Field mustard	extracellular	37.65	42.28
Bra018004.1-P	Field mustard	cytosol	36.06	41.42
Bra011440.1-P	Field mustard	extracellular	38.45	40.72
Bra037005.1-P	Field mustard	extracellular	38.05	40.04
Bra018023.1-P	Field mustard	extracellular	37.05	39.66
Bra003485.1-P	Field mustard	extracellular, golgi	35.86	39.3
Bra022182.1-P	Field mustard	extracellular, golgi	35.06	38.85
Bra007662.1-P	Field mustard	extracellular, plasma membrane	35.46	38.7
Bra013697.1-P	Field mustard	extracellular, plasma membrane	37.65	38.34
Bra007609.1-P	Field mustard	extracellular	35.86	38.3
Bra019299.1-P	Field mustard	extracellular, plasma membrane	37.45	38.13
Bra037429.1-P	Field mustard	extracellular	33.67	38.06
Bra001642.1-P	Field mustard	vacuole	33.86	37.69
Bra020656.1-P	Field mustard	extracellular, plasma membrane	35.06	37.45
Bra001215.1-P	Field mustard	extracellular	33.07	36.97
Bra032138.1-P	Field mustard	cytosol	37.85	23.75
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	21.91	23.01
Bra007626.1-P	Field mustard	mitochondrion	19.32	16.7

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra039462	EnsemblPlants:Bra039462.1	EnsemblPlants:Bra039462.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016787
GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4FEE1	PFAM:PF00295
PANTHER:PTHR31339	PANTHER:PTHR31339:SF21	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI0002547497	SEG:seg	:	:

Description

AT3G42950 (E=2e-237) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA05:+:23451296..23453721

Molecular Weight (calculated)

55677.3 Da

IEP (calculated)

8.262

GRAVY (calculated)

-0.198

Length

502 amino acids

Sequence
(BLAST)

001: MVEPLPITRR RFLSSHKSLV TVFWIAAFAS LFIWQSRGRG GGGGGASLYR VNGSLSSVFW WTATTTTTSS ADAGEFPRLR PVSFNLTDFG AVGDGVTVNT
101: EAFERAVYAI SKLSKKGGGQ LNVPPGRWLT APFNLTSFMT LFLAEDAEIL AVQDETLWPL LPPLPSYGYG REHYGPRYGS FIHGQNLKDV VVTGNNGSIN
201: GQGVYWWKKY RSKLLNHTRG PLVQIMWSSD VVFANITLRD SPFWTLHPYD CKNVTITNMT ILAPVFEAPN TDGIDPDSCE DMLIENSYIS VGDDGIAIKS
301: GWDQYGTNYG RPSKNILIRN LIIRSMVSAG ISIGSEMSGG VSNITVENIL IWSSRRGVRI KTAPGRGGYV RDITFRNVTL DELRVGIVVK TDYNEHPDGG
401: FNPQAFPVLE NINYTGIYGQ GVRVPVRMQG SKEIPVKNVT FRDMSVGITY KKKHIFQCAY VQGRVIGTIF PAPCENLDRY DEQEQLVKQS DSQNATDIDY
501: EI

Best Arabidopsis Sequence Match ( AT3G42950.1 )
(BLAST)

001: MVRRFLSSHK SLITVFWIAT FASLFIWQFG GVSTNLYSGF SLFWSSSSTT TTVFSGGFPK LRPVVFNLTD FGAVGDGVTI NTEAFEKAIY KISKLAKKGG
101: GQLNVPPGRW LTAPFNLTSY MTLFLSENAE ILALQDEKYW SLLPPLPSYG YGREHHGPRY GSFIHGQNLR DVVVTGNNGS INGQGQTWWK KYRQKLLNHT
201: RGPLVQIMWS SDIVFANITL RDSPFWTLHP YDCKNVTITN MTILAPVFEA PNTDGIDPDS CEDMLIENSY ISVGDDGIAI KSGWDQYGTT YGKPSKNILI
301: RNLIIRSMVS AGISIGSEMS GGVSNITVEN ILIWSSRRGV RIKTAPGRGG YVRDITFRNV TLDELRVGIV IKTDYNEHPD GGFNPQAFPI LENINYTGIY
401: GQGVRVPVRI QGSKEIPVKN VTFRDMSVGI TYKKKHIFQC AYVEGRVIGT IFPAPCDNLD RYDEQERLVK QSDSQNATDI DYEI

Arabidopsis Description

AT3g42950/F18P9_110 [Source:UniProtKB/TrEMBL;Acc:Q9M1L0]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.