Factsheet for Bra001215.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74085	Canola	cytoskeleton, cytosol, vacuole	82.85	97.89
AT3G06770.5	Thale cress	extracellular	82.85	83.22
Bra037429.1-P	Field mustard	extracellular	71.71	72.52
Bra020656.1-P	Field mustard	extracellular, plasma membrane	72.16	68.94
VIT_05s0077g01760.t01	Wine grape	extracellular, vacuole	61.47	60.66
KRH37050	Soybean	extracellular, vacuole	60.8	60.4
KRH02302	Soybean	extracellular	58.8	58.8
KRH50791	Soybean	extracellular	58.8	58.8
Bra001642.1-P	Field mustard	vacuole	58.8	58.54
Bra022182.1-P	Field mustard	extracellular, golgi	59.02	58.5
KRH12027	Soybean	extracellular, vacuole	60.58	57.75
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	52.12	55.45
PGSC0003DMT400081328	Potato	extracellular	55.01	53.81
PGSC0003DMT400018848	Potato	extracellular	54.57	53.61
Os12t0554800-01	Rice	cytosol, extracellular	50.33	53.3
Os11t0658800-01	Rice	extracellular	53.23	53.23
Solyc06g009790.2.1	Tomato	extracellular	53.9	52.95
VIT_05s0077g01740.t01	Wine grape	nucleus	27.39	52.12
TraesCS5B01G097100.2	Wheat	extracellular	52.12	52.12
Solyc09g075460.2.1	Tomato	extracellular	55.01	51.46
TraesCS5D01G102900.1	Wheat	unclear	51.45	51.45
KXG29050	Sorghum	extracellular	51.22	51.0
TraesCS4D01G146700.1	Wheat	extracellular, golgi, vacuole	51.89	50.98
Zm00001d023813_P001	Maize	extracellular, vacuole	52.34	50.98
TraesCS4A01G168800.1	Wheat	extracellular, golgi, vacuole	51.67	50.77
TraesCS4B01G144700.2	Wheat	extracellular, golgi, vacuole	51.45	50.55
TraesCS5A01G090800.2	Wheat	extracellular, golgi, mitochondrion, plastid	51.45	48.73
GSMUA_Achr11P...	Banana	extracellular, vacuole	47.22	47.64
HORVU5Hr1G023800.7	Barley	plastid	53.23	46.59
Zm00001d048696_P001	Maize	extracellular	50.56	45.95
Bra003485.1-P	Field mustard	extracellular, golgi	46.33	45.41
Bra007662.1-P	Field mustard	extracellular, plasma membrane	45.21	44.13
Bra028511.1-P	Field mustard	extracellular	42.54	42.73
Bra019264.1-P	Field mustard	extracellular, vacuole	42.54	42.35
Bra013734.1-P	Field mustard	extracellular, vacuole	41.87	42.34
GSMUA_Achr11P...	Banana	extracellular	51.67	42.26
Bra011440.1-P	Field mustard	extracellular	43.21	40.93
Bra037005.1-P	Field mustard	extracellular	41.2	38.78
Bra013697.1-P	Field mustard	extracellular, plasma membrane	41.43	37.73
Bra019299.1-P	Field mustard	extracellular, plasma membrane	41.2	37.53
Bra007609.1-P	Field mustard	extracellular	39.2	37.45
Bra018004.1-P	Field mustard	cytosol	35.63	36.61
Bra018023.1-P	Field mustard	extracellular	38.08	36.46
GSMUA_Achr11P...	Banana	cytosol	51.67	35.05
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	36.97	33.07
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	36.97	32.74
Bra032138.1-P	Field mustard	cytosol	36.97	20.75
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	20.71	19.46
Bra007626.1-P	Field mustard	mitochondrion	22.27	17.21

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra001215	EnsemblPlants:Bra001215.1	EnsemblPlants:Bra001215.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4CAI6	PFAM:PF00295	PANTHER:PTHR31339
PANTHER:PTHR31339:SF15	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI00025403F9
SEG:seg	:	:	:	:	:

Description

AT3G06770 (E=2e-192) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA03:-:15373455..15375734

Molecular Weight (calculated)

48154.0 Da

IEP (calculated)

6.749

GRAVY (calculated)

0.031

Length

449 amino acids

Sequence
(BLAST)

001: MSGALILVLA LTSLIPVYAK THGAGRICDE LGGRSLSTRP HSVSIAEFGA VGDGKTLNTL AFQNAVFYLM SFADKGGAQL YVPPGKWLTG SFSLTSHLTL
101: FLENGAVIVA SQDPSHWGVV EPLPSYGRGI DLPGKRYKSL ISGHMLHDVI ITGDNGTIDG QGLVWWDRFT SHSLKYNRPH LVEFISSQDI TISNVTFLNA
201: PCYTVHAIYS SHVYIDKILA HSSPGSPYTI GIVPDSSDNV CIQNSTINMG YDAISLKSGW DEYGISYSRP TENVHIRNVN LQAASGSSIS FGSEMSGGIS
301: HVVVDNAFIR NSLTGIAFRT TKGRGGYIRE IDVSNIDMWR IGTAIVANGS FGSHPDDKFD ANALPIVNGI RLSNVSGVDI GVAGELFGIK ESPFRSVALY
401: NVSLLMSSGS SSSDGSWSCS YVYGSSKLVT PEPCPELMRV NNGYGRATF

Best Arabidopsis Sequence Match ( AT3G06770.2 )
(BLAST)

001: MSVVTILILA LTSVIPIYAN VHGAGKICDE LGRRSLSTRP HSVSITDFGA VGDGKTLNTL AFQNAVFYLM SFADKGGAQL YVPPGHWLTG SFSLTSHLTL
101: FLENGAVIVA SQDPSHWEVV DPLPSYGRGI DLPGKRYKSL INGNKLHDVV VTGDNGTIDG QGLVWWDRFT SHSLKYNRPH LIEFLSSENV IVSNLTFLNA
201: PAYSIYSIYS SHVYIHKILA HSSPKSPYTI GIVPDSSDYV CIQNSTINVG YDAISLKSGW DEYGIAYSRP TENVHIRNVY LRGASGSSIS FGSEMSGGIS
301: DVVVDNAHIH YSLTGIAFRT TKGRGGYIKE IDISNIDMLR IGTAIVANGS FGSHPDDKYD VNALPLVSHI RLSNISGENI GIAGKLFGIK ESPFSSVTLS
401: NVSLSMSSGS SVSWQCSYVY GSSESVIPEP CPELKRDADA YGRAAV

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN94]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.