Factsheet for TraesCS4A01G168800.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular, vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, vacuole
Any Predictor:	mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G146700.1	Wheat	extracellular, golgi, vacuole	96.06	96.06
TraesCS4B01G144700.2	Wheat	extracellular, golgi, vacuole	95.4	95.4
Os11t0658800-01	Rice	extracellular	78.99	80.4
KXG29050	Sorghum	extracellular	78.34	79.38
Zm00001d048696_P001	Maize	extracellular	75.93	70.24
TraesCS5A01G090800.2	Wheat	extracellular, golgi, mitochondrion, plastid	71.99	69.41
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	60.18	65.17
KRH37050	Soybean	extracellular, vacuole	57.99	58.63
GSMUA_Achr11P...	Banana	extracellular, vacuole	56.89	58.43
VIT_05s0077g01760.t01	Wine grape	extracellular, vacuole	57.11	57.36
KRH12027	Soybean	extracellular, vacuole	58.21	56.48
KRH02302	Soybean	extracellular	55.36	56.35
CDY33922	Canola	extracellular	54.27	55.86
VIT_07s0005g00890.t01	Wine grape	extracellular	58.21	55.77
KRH50791	Soybean	extracellular	54.7	55.68
Bra037429.1-P	Field mustard	extracellular	53.61	55.18
KRH69264	Soybean	extracellular	54.49	54.73
CDY08036	Canola	cytosol, nucleus, vacuole	45.08	54.64
Solyc06g009790.2.1	Tomato	extracellular	54.49	54.49
KRH31843	Soybean	extracellular	54.27	54.39
PGSC0003DMT400018848	Potato	extracellular	54.27	54.27
AT5G49215.1	Thale cress	extracellular, vacuole	53.17	54.12
AT3G06770.5	Thale cress	extracellular	52.74	53.91
CDX74085	Canola	cytoskeleton, cytosol, vacuole	44.64	53.68
PGSC0003DMT400081328	Potato	extracellular	53.83	53.59
GSMUA_Achr11P...	Banana	extracellular	63.9	53.19
AT3G16850.1	Thale cress	vacuole	52.95	53.19
Bra020656.1-P	Field mustard	extracellular, plasma membrane	54.27	52.77
CDY56436	Canola	extracellular, vacuole	54.49	52.53
Bra022182.1-P	Field mustard	extracellular, golgi	51.86	52.32
CDX92101	Canola	extracellular, golgi	52.08	52.31
CDX95899	Canola	extracellular	51.64	52.1
Bra001215.1-P	Field mustard	extracellular	50.77	51.67
Solyc09g075460.2.1	Tomato	extracellular	54.27	51.67
CDY54633	Canola	extracellular	50.55	51.56
TraesCS4A01G358700.1	Wheat	extracellular	50.55	51.45
VIT_05s0077g01740.t01	Wine grape	nucleus	26.48	51.27
CDY05643	Canola	extracellular, plasma membrane, plastid	53.61	51.26
KRG96478	Soybean	endoplasmic reticulum, extracellular	54.05	51.24
CDX82390	Canola	extracellular	50.33	51.22
Bra001642.1-P	Field mustard	vacuole	50.55	51.22
KRH68221	Soybean	extracellular	54.49	50.1
CDX86247	Canola	plasma membrane, plastid	54.27	49.5
GSMUA_Achr11P...	Banana	cytosol	61.05	42.15
TraesCS7A01G323800.3	Wheat	plastid	42.89	40.41
TraesCS5A01G513600.1	Wheat	extracellular	39.17	39.69
TraesCS6A01G340000.1	Wheat	mitochondrion	40.26	37.17
TraesCS7A01G019400.1	Wheat	extracellular, plastid, vacuole	40.26	35.32
TraesCS7A01G019500.1	Wheat	cytosol	19.26	32.84
TraesCS7A01G019900.1	Wheat	cytosol	19.26	32.84
TraesCS5A01G212900.1	Wheat	plastid	37.64	32.39
TraesCS7A01G019700.1	Wheat	cytosol	6.78	25.2
TraesCS3A01G393600.1	Wheat	extracellular	20.79	20.93
TraesCS5A01G264400.2	Wheat	unclear	20.35	20.35

Protein Annotations

EnsemblPlants:TraesCS4A01G168800.1	EnsemblPlantsGene:TraesCS4A01G168800	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31339	PANTHER:PTHR31339:SF11	PFAM:PF00295	SignalP:SignalP-noTM
SUPFAM:SSF51126	MapMan:50.3.2	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:423155190..423158334

Molecular Weight (calculated)

49536.7 Da

IEP (calculated)

5.088

GRAVY (calculated)

0.039

Length

457 amino acids

Sequence
(BLAST)

001: MKRLWRLQVV LSWVLAVVLG SVHGHVRRQW GEQVPPESRP HSVTITEFGA VGDGRTLNTL PFQNAVFYAR SFADKGGAQL YVPKGRWLTG SFNLTSHLTL
101: FLEKDAIIVG TEESSQWPIV EPLPSYGQGL DLPGPRHCSL INGYNLTDVV ITGNNGLIDG QGLVWWDWLR SHELNHSRPH LVEFLYSEEI VISNLTFLNS
201: PAWSIHPVYC SNVKVHNVTI KTLLDAPLTD GIVPDSCLNV CIEDSTISVS HEAISVKSGL DKYGISIGRP TSDIHISRVD LQASSGAALA FGSEMSGGIS
301: GIHADHLRIH GSDKGFSLKT TPGRGGYIKE VIISDVEMDG IRVAIEFIGN LSSHPDDDFD PSELPVIDQI TLKNMVGTNI SVAGILLGID SDPFTAICLS
401: NLSFSITDSL HSSPWSCSNV SGYSESVLPE PCSELYAPSS NSSICFSLPS YSALDVA

Best Arabidopsis Sequence Match ( AT5G49215.1 )
(BLAST)

001: MPVSVALVLL LTLSSVILIN GRSYGVGNIC DRGRRPSERP HSVKITDFGA VGDGKTLNTL AFQNAVFYLK SFADKGGAQL YVPPGRWLTG SFNLTSHLTL
101: FLEKDAVILA SQDPSHWQVT DALPSYGRGI DLPGKRYMSL INGDMLHDVV VTGDNGTIDG QGLVWWDRFN SHSLEYSRPH LVEFVSAENV IVSNLTFLNA
201: PAYTIHSVYC RNLYIHRVTA NTCPESPYTI GIVPDSSENV CIQESSINMG YDAISLKSGC DEYGLSYARP TANVQIRNVY LRAASGSSIS FGSEMSGGIS
301: DVEVSDAHIH NSLSGIAFRT TNGRGGYIKE IDISNIHMVN VGTAFLANGS FGTHPDSGFD ENAYPLVSHI RLHDIVGENI STAGYFFGTK ESPFTSILLS
401: NISLSIKNSA SPADSWQCSY VDGSSEFVVP EPCLELKSFD SYYGRAEAL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8RX04]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.