Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 6
- vacuole 6
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022182.1-P | Field mustard | extracellular, golgi | 86.37 | 86.75 |
| CDX92101 | Canola | extracellular, golgi | 86.37 | 86.37 |
| CDX95899 | Canola | extracellular | 85.27 | 85.65 |
| CDY54633 | Canola | extracellular | 84.18 | 85.49 |
| CDX82390 | Canola | extracellular | 83.96 | 85.08 |
| Bra001642.1-P | Field mustard | vacuole | 84.18 | 84.92 |
| KRH37050 | Soybean | extracellular, vacuole | 61.1 | 61.5 |
| AT3G06770.5 | Thale cress | extracellular | 60.22 | 61.3 |
| VIT_05s0077g01760.t01 | Wine grape | extracellular, vacuole | 60.44 | 60.44 |
| KRH50791 | Soybean | extracellular | 59.56 | 60.36 |
| AT5G49215.1 | Thale cress | extracellular, vacuole | 59.12 | 59.91 |
| KRH02302 | Soybean | extracellular | 58.46 | 59.24 |
| KRH12027 | Soybean | extracellular, vacuole | 61.1 | 59.02 |
| Solyc06g009790.2.1 | Tomato | extracellular | 58.24 | 57.99 |
| PGSC0003DMT400018848 | Potato | extracellular | 58.24 | 57.99 |
| GSMUA_Achr5P00100_001 | Banana | cytosol, extracellular, plastid | 53.63 | 57.82 |
| PGSC0003DMT400081328 | Potato | extracellular | 57.58 | 57.08 |
| Zm00001d023813_P001 | Maize | extracellular, vacuole | 57.8 | 57.05 |
| Os12t0554800-01 | Rice | cytosol, extracellular | 52.97 | 56.84 |
| TraesCS5B01G097100.2 | Wheat | extracellular | 54.73 | 55.46 |
| TraesCS5D01G102900.1 | Wheat | unclear | 54.73 | 55.46 |
| Os11t0658800-01 | Rice | extracellular | 54.51 | 55.23 |
| KXG29050 | Sorghum | extracellular | 54.51 | 54.99 |
| Solyc09g075460.2.1 | Tomato | extracellular | 57.58 | 54.58 |
| TraesCS4D01G146700.1 | Wheat | extracellular, golgi, vacuole | 54.29 | 54.05 |
| TraesCS4B01G144700.2 | Wheat | extracellular, golgi, vacuole | 53.85 | 53.61 |
| TraesCS4A01G168800.1 | Wheat | extracellular, golgi, vacuole | 53.19 | 52.95 |
| VIT_05s0077g01740.t01 | Wine grape | nucleus | 27.25 | 52.54 |
| TraesCS5A01G090800.2 | Wheat | extracellular, golgi, mitochondrion, plastid | 54.73 | 52.53 |
| GSMUA_Achr11P... | Banana | extracellular, vacuole | 49.23 | 50.34 |
| Zm00001d048696_P001 | Maize | extracellular | 53.63 | 49.39 |
| AT3G62110.1 | Thale cress | vacuole | 50.99 | 49.26 |
| HORVU5Hr1G023800.7 | Barley | plastid | 55.16 | 48.93 |
| AT4G23820.1 | Thale cress | extracellular, vacuole | 46.15 | 47.3 |
| AT5G41870.1 | Thale cress | extracellular | 45.05 | 45.66 |
| GSMUA_Achr11P... | Banana | extracellular | 53.85 | 44.63 |
| AT4G33440.1 | Thale cress | extracellular | 44.18 | 42.32 |
| AT3G48950.1 | Thale cress | extracellular | 41.98 | 40.72 |
| AT2G23900.1 | Thale cress | extracellular | 41.1 | 39.2 |
| AT4G23500.1 | Thale cress | extracellular, plasma membrane | 42.64 | 39.19 |
| GSMUA_Achr11P... | Banana | cytosol | 52.53 | 36.1 |
| AT3G42950.1 | Thale cress | extracellular, golgi | 37.58 | 35.33 |
| AT1G19170.1 | Thale cress | cytosol, extracellular, mitochondrion, peroxisome | 39.12 | 35.18 |
| AT3G61490.4 | Thale cress | cytosol, plastid | 42.86 | 33.11 |
| AT3G57790.1 | Thale cress | extracellular, plasma membrane, vacuole | 20.22 | 18.78 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EntrezGene:820938 | UniProt:A0A178VAH0 | ProteinID:AEE75873.1 | ArrayExpress:AT3G16850 |
| EnsemblPlantsGene:AT3G16850 | RefSeq:AT3G16850 | TAIR:AT3G16850 | RefSeq:AT3G16850-TAIR-G | EnsemblPlants:AT3G16850.1 | TAIR:AT3G16850.1 |
| EMBL:AY035074 | EMBL:AY113876 | Unigene:At.22797 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 |
| GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005773 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009505 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016798 | GO:GO:0016829 | GO:GO:0030312 | GO:GO:0071555 |
| InterPro:Glyco_hydro_28 | InterPro:IPR012334 | RefSeq:NP_188308.1 | ProteinID:OAP03169.1 | PFAM:PF00295 | PFAM:PF12708 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR31339 | PANTHER:PTHR31339:SF15 | InterPro:PbH1 | InterPro:Pectate_lyase_SF_prot | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence |
| UniProt:Q94C86 | SMART:SM00710 | SUPFAM:SSF51126 | SignalP:SignalP-noTM | UniParc:UPI0000048727 | : |
Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94C86]
Coordinates
chr3:+:5748497..5751301
Molecular Weight (calculated)
49127.1 Da
IEP (calculated)
5.652
GRAVY (calculated)
-0.014
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MKMPVALVWL LAFTILLISG EGNNAICKEN FKLDPRPHSV SILEFGAVGD GKTLNTIAFQ NAVFYLKSFA DKGGAQLYVP PGKWLTGSFN LTSHLTLFLE
101: KGATILASPD PSHWDVVSPL PSYGRGIELP GKRYRSLING DNLIDVVITG ENGTFDGQGA AWWEWLESGS LNYSRPHIIE FVSSKHILIS NLTFLNAPAI
201: NIHPVYCSQI HIRKVLIETS VDSPHVLGVA PDSSDNVCIE DSTINVGHDA VSLKSGWDQY GIHYGRPTTA VHIRNLRLKS PTGAGISFGS EMSGGVSDVT
301: VERLNIHSSL IGVAFRTTRG RGGYIRNITI SDVDLTSVDT AIVANGHTGS HPDDKFDRDA LPVVTHIVMR NFTGVDIGVA GNLTGIGESP FTSICLADIH
401: LQTRSEESWI CSNVSGFSDD VSPEPCQELM SSPSSCFAGG SIYEGDATAQ SYYSW
101: KGATILASPD PSHWDVVSPL PSYGRGIELP GKRYRSLING DNLIDVVITG ENGTFDGQGA AWWEWLESGS LNYSRPHIIE FVSSKHILIS NLTFLNAPAI
201: NIHPVYCSQI HIRKVLIETS VDSPHVLGVA PDSSDNVCIE DSTINVGHDA VSLKSGWDQY GIHYGRPTTA VHIRNLRLKS PTGAGISFGS EMSGGVSDVT
301: VERLNIHSSL IGVAFRTTRG RGGYIRNITI SDVDLTSVDT AIVANGHTGS HPDDKFDRDA LPVVTHIVMR NFTGVDIGVA GNLTGIGESP FTSICLADIH
401: LQTRSEESWI CSNVSGFSDD VSPEPCQELM SSPSSCFAGG SIYEGDATAQ SYYSW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.