Factsheet for AT3G48950.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

endoplasmic reticulum 5
golgi 5
extracellular 7
vacuole 5
plasma membrane 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	endoplasmic reticulum, extracellular, golgi
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05885	Canola	extracellular	85.71	86.64
Bra018023.1-P	Field mustard	extracellular	86.35	86.35
CDY08095	Canola	extracellular, plasma membrane	86.35	81.82
AT2G23900.1	Thale cress	extracellular	75.48	74.21
KRG91587	Soybean	cytosol, extracellular, plastid	34.97	67.21
KRH35240	Soybean	extracellular	66.31	66.03
KRH35239	Soybean	extracellular, plasma membrane, plastid	67.38	65.83
KRH38380	Soybean	extracellular	65.25	64.29
KRH35238	Soybean	extracellular	63.33	63.73
KRH08861	Soybean	extracellular	64.82	63.73
AT4G23500.1	Thale cress	extracellular, plasma membrane	65.25	61.82
Solyc03g007950.2.1	Tomato	extracellular	59.28	59.53
PGSC0003DMT400024595	Potato	cytosol	57.78	56.81
VIT_16s0050g01120.t01	Wine grape	cytosol	21.96	55.08
AT3G61490.4	Thale cress	cytosol, plastid	60.98	48.56
AT4G23820.1	Thale cress	extracellular, vacuole	43.07	45.5
AT3G62110.1	Thale cress	vacuole	43.92	43.74
AT3G16850.1	Thale cress	vacuole	40.72	41.98
AT4G33440.1	Thale cress	extracellular	42.43	41.89
AT5G41870.1	Thale cress	extracellular	40.09	41.87
AT5G49215.1	Thale cress	extracellular, vacuole	38.81	40.53
AT3G06770.5	Thale cress	extracellular	37.95	39.82
AT3G42950.1	Thale cress	extracellular, golgi	40.94	39.67
AT1G19170.1	Thale cress	cytosol, extracellular, mitochondrion, peroxisome	40.09	37.15
VIT_16s0050g01110.t01	Wine grape	extracellular, golgi	67.8	30.26
AT3G57790.1	Thale cress	extracellular, plasma membrane, vacuole	23.45	22.45

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EntrezGene:824056	UniProt:A0A178VEU4	ProteinID:AEE78476.1	ArrayExpress:AT3G48950
EnsemblPlantsGene:AT3G48950	RefSeq:AT3G48950	TAIR:AT3G48950	RefSeq:AT3G48950-TAIR-G	EnsemblPlants:AT3G48950.1	TAIR:AT3G48950.1
Unigene:At.53842	ProteinID:CAB62015.1	EMBL:DQ056615	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0016829	GO:GO:0071555	InterPro:Glyco_hydro_28
InterPro:IPR012334	RefSeq:NP_001319713.1	ProteinID:OAP04987.1	PFAM:PF00295	PO:PO:0007611	PO:PO:0009046
PO:PO:0020090	PANTHER:PTHR31339	PANTHER:PTHR31339:SF17	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
UniProt:Q9SMT3	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0000048818	SEG:seg

Description

Endo-polygalacturonase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SMT3]

Coordinates

chr3:+:18147671..18150058

Molecular Weight (calculated)

51202.7 Da

IEP (calculated)

8.830

GRAVY (calculated)

-0.070

Length

469 amino acids

Sequence
(BLAST)

001: MIRPTFGLLV FLAIFLFPAI ESRSHRNSVT SKIEFSALNC RKHSAILTDF GAVGDGKTSN TKAFRNAISK LSQMATDGGA QLVVPPGKWL TGSFNLTSHF
101: TLFIQRGATI LASQDESEWP VIAPLPSYGK GRDGTGTGRF NSLISGTNLT DVVITGNNGT INGQGQYWWD KFKKKQFKIT RPYLIEILFS KNIQISNITL
201: IDSPSWNIHP VYCNSVIVKS VTVLAPVTVP NTDGINPDSC TNTLIEDCYI VSGDDCIAVK SGWDQYGIKF GMPTQQLSIR RLTCISPKSA GVALGSEMSG
301: GIKDVRIEDV TLTNTESAIR IKTAVGRGAY VKDIYARRIT MKTMKYVFWM SGNYGSHPDE GFDPKALPEI TNINYRDMTA ENVTMSASLD GIDKDPFTGI
401: CISNVTIALA AKAKKMQWNC TDVAGVTSRV TPEPCSLLPE KKAQAKNVDC AFPSDLIPIE SVVLKKCFL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.