Factsheet for AT3G61490.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65355	Canola	extracellular	73.68	91.95
Bra007609.1-P	Field mustard	extracellular	73.17	91.7
CDY48913	Canola	extracellular	73.17	91.51
PGSC0003DMT400094734	Potato	cytosol	14.09	79.05
PGSC0003DMT400055769	Potato	extracellular	58.57	72.33
KRH48075	Soybean	extracellular	58.91	71.99
Solyc01g094970.2.1	Tomato	extracellular	49.41	71.5
Solyc05g049980.2.1	Tomato	extracellular	58.23	70.58
KRH00832	Soybean	nucleus	57.89	70.45
KRH06594	Soybean	mitochondrion	58.23	69.86
KRH40394	Soybean	extracellular, nucleus	57.39	69.83
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	56.54	69.52
KRH48076	Soybean	extracellular	55.35	68.78
PGSC0003DMT400000538	Potato	extracellular	55.18	68.42
GSMUA_Achr4P05580_001	Banana	cytosol	34.97	66.03
GSMUA_Achr11P...	Banana	cytosol	33.28	62.82
GSMUA_Achr11P...	Banana	cytosol	31.92	61.64
Os06t0106800-01	Rice	extracellular	50.59	61.44
EER89047	Sorghum	extracellular, vacuole	51.61	61.41
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	20.88	61.19
AT3G48950.1	Thale cress	extracellular	48.56	60.98
Zm00001d035899_P001	Maize	extracellular	50.08	60.7
AT4G23500.1	Thale cress	extracellular, plasma membrane	50.59	60.2
TraesCS5A01G513600.1	Wheat	extracellular	46.01	60.09
GSMUA_Achr11P...	Banana	extracellular	48.56	60.08
Os03t0124900-01	Rice	extracellular	45.5	58.52
EER95599	Sorghum	extracellular	45.67	58.1
AT2G23900.1	Thale cress	extracellular	46.86	57.86
Zm00001d027441_P001	Maize	plasma membrane	45.33	57.67
TraesCS7D01G016300.2	Wheat	extracellular	47.2	56.85
TraesCS7A01G019900.1	Wheat	cytosol	25.3	55.6
TraesCS4B01G344700.1	Wheat	extracellular	45.84	55.56
TraesCS7A01G019500.1	Wheat	cytosol	25.13	55.22
TraesCS7A01G019400.1	Wheat	extracellular, plastid, vacuole	47.37	53.55
TraesCSU01G066000.1	Wheat	golgi, unclear	47.71	53.42
Zm00001d018548_P001	Maize	cytosol	20.71	52.59
Zm00001d010681_P001	Maize	cytosol	24.28	50.53
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	14.09	47.16
AT4G23820.1	Thale cress	extracellular, vacuole	34.47	45.72
AT3G62110.1	Thale cress	vacuole	36.16	45.22
TraesCS7A01G019700.1	Wheat	cytosol	9.17	43.9
AT5G41870.1	Thale cress	extracellular	32.94	43.21
AT3G16850.1	Thale cress	vacuole	33.11	42.86
AT4G33440.1	Thale cress	extracellular	34.13	42.32
AT5G49215.1	Thale cress	extracellular, vacuole	32.09	42.09
AT3G06770.5	Thale cress	extracellular	30.9	40.72
AT1G19170.1	Thale cress	cytosol, extracellular, mitochondrion, peroxisome	31.58	36.76
AT3G42950.1	Thale cress	extracellular, golgi	30.05	36.57
Solyc06g030520.1.1	Tomato	cytosol	6.62	34.21
PGSC0003DMT400065330	Potato	nucleus	10.36	29.76
AT3G57790.1	Thale cress	extracellular, plasma membrane, vacuole	17.83	21.43

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EntrezGene:825322	UniProt:A0A1I9LS88	ProteinID:AEE80211.1	ProteinID:AEE80212.1
ProteinID:AEE80213.1	ProteinID:ANM65446.1	ProteinID:ANM65447.1	ArrayExpress:AT3G61490	EnsemblPlantsGene:AT3G61490	RefSeq:AT3G61490
TAIR:AT3G61490	RefSeq:AT3G61490-TAIR-G	EnsemblPlants:AT3G61490.4	Unigene:At.43625	ProteinID:CAB71079.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0016829
GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	RefSeq:NP_001190154.1	RefSeq:NP_001327412.1	RefSeq:NP_001327413.1
RefSeq:NP_191708.1	RefSeq:NP_974473.1	ProteinID:OAP04720.1	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF12
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	UniParc:UPI0008492A2B
SEG:seg	:	:	:	:	:

Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS88]

Coordinates

chr3:+:22757761..22760470

Molecular Weight (calculated)

64708.2 Da

IEP (calculated)

7.438

GRAVY (calculated)

-0.094

Length

589 amino acids

Sequence
(BLAST)

001: MSLFAITSAF SEDNVTAISS NQLIPLNDKI IANLIRSPNT QTKSLNLASS FLHSLSAYKY SYSLLLTSSS NHLASPHSQR AHKSQVILFL SLKHKHTQMY
101: KQTHHFCFQI YKTMKNILAC IVTIITLSNL ITISQGRRVS QSFETFEYTA IICRSHSASI TEYGGVGDGK TLNTKAFQSA VDHLSQYSSE GGAQLFVPAG
201: KWLTGSFNLT SHFTLFLHKD AILLAAQDLN EYPILKALPS YGRGRDAAGG RFASLIFGTN LSDVIITGNN GTIDGQGSFW WQKFHGGKLK YTRPYLIELM
301: FSDTIQISNL TFLDSPSWNI HPVYSSNIIV KGVTIIAPVK SPNTDGINPD SCTNTRIEDC YIISGDDCIA VKSGWDEYGI SFGMPTKHLV IRRLTCISPY
401: SAAIALGSEM SGGIEDVRAE DITAYQTESG VRIKTAVGRG AFVKNIYVKG MNLHTMKWVF WMTGNYKAHA DSHYDPHALP EITGINYRDI VAENVSMAGR
501: LEGISGDPFT GICISNATIS MAAKHKKAIW MCSDVEGVTS GVDPKPCDLL DGQESETTKK KMIDGGCDFP TDVLEIDNVE LKTCSYQMS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.