Factsheet for PGSC0003DMT400055769

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g049980.2.1	Tomato	extracellular	97.06	95.27
PGSC0003DMT400094734	Potato	cytosol	18.87	85.71
PGSC0003DMT400000538	Potato	extracellular	82.6	82.95
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	75.89	75.57
KRH48075	Soybean	extracellular	74.84	74.07
Bra007609.1-P	Field mustard	extracellular	72.75	73.83
CDY65355	Canola	extracellular	72.75	73.52
CDY48913	Canola	extracellular	72.54	73.46
KRH40394	Soybean	extracellular, nucleus	74.42	73.35
KRH00832	Soybean	nucleus	74.42	73.35
KRH06594	Soybean	mitochondrion	74.63	72.51
KRH48076	Soybean	extracellular	71.28	71.73
PGSC0003DMT400032104	Potato	extracellular	70.65	69.77
GSMUA_Achr4P05580_001	Banana	cytosol	44.23	67.63
GSMUA_Achr11P...	Banana	cytosol	41.51	63.46
Os06t0106800-01	Rice	extracellular	64.36	63.3
GSMUA_Achr11P...	Banana	cytosol	40.25	62.95
GSMUA_Achr11P...	Banana	extracellular	62.26	62.4
EER89047	Sorghum	extracellular, vacuole	63.73	61.41
TraesCS5A01G513600.1	Wheat	extracellular	57.23	60.53
Zm00001d035899_P001	Maize	extracellular	61.43	60.29
Os03t0124900-01	Rice	extracellular	57.86	60.26
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	25.16	59.7
EER95599	Sorghum	extracellular	57.86	59.61
Zm00001d027441_P001	Maize	plasma membrane	57.02	58.75
PGSC0003DMT400024595	Potato	cytosol	58.7	58.7
AT3G61490.4	Thale cress	cytosol, plastid	72.33	58.57
TraesCS7D01G016300.2	Wheat	extracellular	59.33	57.87
TraesCS4B01G344700.1	Wheat	extracellular	57.44	56.38
TraesCS7A01G019900.1	Wheat	cytosol	31.03	55.22
TraesCSU01G066000.1	Wheat	golgi, unclear	59.75	54.18
TraesCS7A01G019400.1	Wheat	extracellular, plastid, vacuole	59.12	54.13
TraesCS7A01G019500.1	Wheat	cytosol	30.4	54.1
Zm00001d018548_P001	Maize	cytosol	25.79	53.02
Zm00001d010681_P001	Maize	cytosol	30.61	51.59
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	18.03	48.86
PGSC0003DMT400031687	Potato	extracellular	42.56	45.41
PGSC0003DMT400081328	Potato	extracellular	43.19	44.88
PGSC0003DMT400018848	Potato	extracellular	42.56	44.42
TraesCS7A01G019700.1	Wheat	cytosol	11.11	43.09
PGSC0003DMT400030711	Potato	extracellular, golgi, nucleus	41.51	40.74
PGSC0003DMT400036866	Potato	extracellular, golgi	38.78	37.99
PGSC0003DMT400007594	Potato	extracellular	38.99	37.58
PGSC0003DMT400065330	Potato	nucleus	15.09	35.12
PGSC0003DMT400041391	Potato	cytosol	9.64	27.71
PGSC0003DMT400033674	Potato	extracellular, plasma membrane	22.01	22.06

Protein Annotations

EntrezGene:102583279	Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_28
InterPro:IPR012334	UniProt:M1BYH5	PFAM:PF00295	EnsemblPlantsGene:PGSC0003DMG400021658	PGSC:PGSC0003DMG400021658	EnsemblPlants:PGSC0003DMT400055769
PANTHER:PTHR31339	PANTHER:PTHR31339:SF7	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI000295A97B	RefSeq:XP_006345583.1	SEG:seg	:	:

Description

Polygalacturonase [Source:PGSC_GENE;Acc:PGSC0003DMG400021658]

Coordinates

chr5:-:44003464..44009730

Molecular Weight (calculated)

52264.2 Da

IEP (calculated)

5.276

GRAVY (calculated)

-0.140

Length

477 amino acids

Sequence
(BLAST)

001: MEKTSWLLVV LVGVVLISLL GGAEGRKSRI LDESSYYDLE YSAISCRAHS ASITDFGGVG DGKTLNTKAF QEAVNQLSKY ASDGGSQLIV PAGQWLTGSF
101: NLTSHFTLFL HKDAVLLASQ DINEWAVIDP LPSYGHGRDA AGGRYISLLF GTNLTDVIIT GENGTIDGQG EIWWQKFHSK KLKYTRPYLI EIMHSDNIQI
201: SDITLVNSPS WNIHPVYSSN IIVKGITILA PVKSPNTDGI NPDSCTNMRI EDNYIVSGDD CVAVKSGWDE YGINYGMPTS QLIIRRLTCI SPYSAAIALG
301: SEMSGGIQDV RAEDITAINT ESGVRIKTGV GRGGFVKDVY VKGMTLHTMK WVFWMTGNYG QHADTHWDPN ALPEIKGINY RDVVAENVSM AARLEGISGD
401: PFTGICISNV TISMAKKAKK YPWTCTDIEG ITSGVQPPPC QLLPDQGPEK TEMCSFPTEN LAIDNIEMQR CSYRLNY

Best Arabidopsis Sequence Match ( AT3G61490.4 )
(BLAST)

001: MSLFAITSAF SEDNVTAISS NQLIPLNDKI IANLIRSPNT QTKSLNLASS FLHSLSAYKY SYSLLLTSSS NHLASPHSQR AHKSQVILFL SLKHKHTQMY
101: KQTHHFCFQI YKTMKNILAC IVTIITLSNL ITISQGRRVS QSFETFEYTA IICRSHSASI TEYGGVGDGK TLNTKAFQSA VDHLSQYSSE GGAQLFVPAG
201: KWLTGSFNLT SHFTLFLHKD AILLAAQDLN EYPILKALPS YGRGRDAAGG RFASLIFGTN LSDVIITGNN GTIDGQGSFW WQKFHGGKLK YTRPYLIELM
301: FSDTIQISNL TFLDSPSWNI HPVYSSNIIV KGVTIIAPVK SPNTDGINPD SCTNTRIEDC YIISGDDCIA VKSGWDEYGI SFGMPTKHLV IRRLTCISPY
401: SAAIALGSEM SGGIEDVRAE DITAYQTESG VRIKTAVGRG AFVKNIYVKG MNLHTMKWVF WMTGNYKAHA DSHYDPHALP EITGINYRDI VAENVSMAGR
501: LEGISGDPFT GICISNATIS MAAKHKKAIW MCSDVEGVTS GVDPKPCDLL DGQESETTKK KMIDGGCDFP TDVLEIDNVE LKTCSYQMS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS88]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.