Factsheet for TraesCS5A01G513600.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G344700.1	Wheat	extracellular	95.79	88.89
Os03t0124900-01	Rice	extracellular	86.25	84.93
Zm00001d027441_P001	Maize	plasma membrane	83.59	81.43
EER95599	Sorghum	extracellular	81.82	79.7
PGSC0003DMT400094734	Potato	cytosol	16.19	69.52
Zm00001d018548_P001	Maize	cytosol	34.37	66.81
Zm00001d010681_P001	Maize	cytosol	41.46	66.08
CDY69951	Canola	cytosol	18.18	65.08
CDY10898	Canola	cytosol	6.87	60.78
Solyc01g094970.2.1	Tomato	extracellular	52.99	58.72
CDY70893	Canola	cytosol	45.9	57.82
PGSC0003DMT400055769	Potato	extracellular	60.53	57.23
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	60.75	57.2
Solyc05g049980.2.1	Tomato	extracellular	61.42	57.0
VIT_02s0025g00260.t01	Wine grape	extracellular	60.53	56.88
KRH48075	Soybean	extracellular	60.75	56.85
CDY65355	Canola	extracellular	59.42	56.78
Solyc08g081480.2.1	Tomato	extracellular	60.31	56.31
KRH48076	Soybean	extracellular	58.98	56.12
CDY69255	Canola	cytosol	46.78	56.12
PGSC0003DMT400032104	Potato	extracellular	60.09	56.11
Bra007609.1-P	Field mustard	extracellular	58.31	55.96
CDY48913	Canola	extracellular	58.31	55.84
PGSC0003DMT400000538	Potato	extracellular	58.76	55.79
KRH41230	Soybean	nucleus	60.98	55.67
TraesCS7A01G019900.1	Wheat	cytosol	33.04	55.6
KRH59960	Soybean	nucleus	60.09	55.08
KRH06594	Soybean	mitochondrion	59.65	54.79
KRH00832	Soybean	nucleus	58.54	54.55
TraesCS7A01G019500.1	Wheat	cytosol	32.37	54.48
KRH40394	Soybean	extracellular, nucleus	58.09	54.13
Bra019299.1-P	Field mustard	extracellular, plasma membrane	57.43	52.54
AT4G23500.1	Thale cress	extracellular, plasma membrane	57.43	52.32
CDY44105	Canola	cytosol, nucleus, plasma membrane	52.11	51.99
Bra013697.1-P	Field mustard	extracellular, plasma membrane	56.54	51.72
TraesCS7A01G019400.1	Wheat	extracellular, plastid, vacuole	56.98	49.33
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	17.96	46.02
AT3G61490.4	Thale cress	cytosol, plastid	60.09	46.01
TraesCS4A01G358700.1	Wheat	extracellular	45.45	45.66
CDY10899	Canola	cytosol	9.53	44.79
TraesCS7A01G323800.3	Wheat	plastid	45.45	42.27
TraesCS4A01G168800.1	Wheat	extracellular, golgi, vacuole	39.69	39.17
TraesCS6A01G340000.1	Wheat	mitochondrion	42.79	38.99
TraesCS5A01G090800.2	Wheat	extracellular, golgi, mitochondrion, plastid	40.58	38.61
TraesCS7A01G019700.1	Wheat	cytosol	10.42	38.21
TraesCS5A01G212900.1	Wheat	plastid	43.46	36.91
Solyc06g030520.1.1	Tomato	cytosol	7.98	31.58
PGSC0003DMT400065330	Potato	nucleus	12.2	26.83
KRH33610	Soybean	plastid	9.98	25.0
TraesCS3A01G393600.1	Wheat	extracellular	23.28	23.13
TraesCS5A01G264400.2	Wheat	unclear	22.84	22.54

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295
PANTHER:PTHR31339	PANTHER:PTHR31339:SF39	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5A01G513600	EnsemblPlants:TraesCS5A01G513600.1	SEG:seg

Description

No Description!

Coordinates

chr5A:-:677161115..677163831

Molecular Weight (calculated)

48792.0 Da

IEP (calculated)

6.007

GRAVY (calculated)

-0.152

Length

451 amino acids

Sequence
(BLAST)

001: MAARRAALQV AVVLLALCAG GIGASPGCRK HVRRVTEYGA VGDGRTLNTA AFARAVADLG RRAGDGGAAL VVPEGRWLTG PFNLTSHFTL FLHRGAEILA
101: SQDLEDWPLI APLPSYGRGR DEPGPRYSNF IGGSNLTDVT ISGYNGTING QGQVWWDKFH AKQLDYTRGY LLELLYSRDI IISNVTFVDA PSWNLHPTYC
201: TNVTISGVTI LAPVHSPNTD GIDPDSSSHV KIEDCYIVSG DDCIAVKSGW DEYGIKFNMP SQHIVVRRLT CISPTSAMIA LGSEMSGGIQ DVRVEDNTAI
301: DTESAVRIKS GVGRGGFVRD VFVRRLSLHT MKWVFWMTGN YGQHPDNSSD PKALPEVTGI NYRDVFAENV TMAGRMEGIP NDPYTGICMS NITAQLAPKA
401: KKLQWNCTDV QGVASGVSPE PCPELGAEGK PCTFPEEELV IGPPELPKCT Y

Best Arabidopsis Sequence Match ( AT3G48950.1 )
(BLAST)

001: MIRPTFGLLV FLAIFLFPAI ESRSHRNSVT SKIEFSALNC RKHSAILTDF GAVGDGKTSN TKAFRNAISK LSQMATDGGA QLVVPPGKWL TGSFNLTSHF
101: TLFIQRGATI LASQDESEWP VIAPLPSYGK GRDGTGTGRF NSLISGTNLT DVVITGNNGT INGQGQYWWD KFKKKQFKIT RPYLIEILFS KNIQISNITL
201: IDSPSWNIHP VYCNSVIVKS VTVLAPVTVP NTDGINPDSC TNTLIEDCYI VSGDDCIAVK SGWDQYGIKF GMPTQQLSIR RLTCISPKSA GVALGSEMSG
301: GIKDVRIEDV TLTNTESAIR IKTAVGRGAY VKDIYARRIT MKTMKYVFWM SGNYGSHPDE GFDPKALPEI TNINYRDMTA ENVTMSASLD GIDKDPFTGI
401: CISNVTIALA AKAKKMQWNC TDVAGVTSRV TPEPCSLLPE KKAQAKNVDC AFPSDLIPIE SVVLKKCFL

Arabidopsis Description

Endo-polygalacturonase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SMT3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.