Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G019900.1 | Wheat | cytosol | 96.27 | 96.27 |
| TraesCS7A01G019700.1 | Wheat | cytosol | 38.43 | 83.74 |
| CDY10898 | Canola | cytosol | 12.31 | 64.71 |
| GSMUA_Achr3P27460_001 | Banana | extracellular, plastid | 45.9 | 61.19 |
| PGSC0003DMT400094734 | Potato | cytosol | 20.9 | 53.33 |
| CDY69951 | Canola | cytosol | 22.76 | 48.41 |
| TraesCS7A01G019400.1 | Wheat | extracellular, plastid, vacuole | 85.07 | 43.76 |
| TraesCSU01G066000.1 | Wheat | golgi, unclear | 85.82 | 43.73 |
| GSMUA_Achr4P05580_001 | Banana | cytosol | 50.0 | 42.95 |
| Zm00001d035899_P001 | Maize | extracellular | 72.76 | 40.12 |
| CDY70893 | Canola | cytosol | 51.87 | 38.83 |
| Os06t0106800-01 | Rice | extracellular | 70.15 | 38.76 |
| EER89047 | Sorghum | extracellular, vacuole | 70.9 | 38.38 |
| CDY69255 | Canola | cytosol | 51.87 | 36.97 |
| CDY10899 | Canola | cytosol | 12.69 | 35.42 |
| TraesCS5A01G513600.1 | Wheat | extracellular | 54.48 | 32.37 |
| Bra007609.1-P | Field mustard | extracellular | 56.34 | 32.13 |
| CDY48913 | Canola | extracellular | 56.34 | 32.06 |
| CDY65355 | Canola | extracellular | 55.97 | 31.78 |
| KRH00832 | Soybean | nucleus | 55.97 | 30.99 |
| KRH48075 | Soybean | extracellular | 55.6 | 30.91 |
| PGSC0003DMT400032104 | Potato | extracellular | 55.6 | 30.85 |
| KRH40394 | Soybean | extracellular, nucleus | 55.6 | 30.79 |
| CDY44105 | Canola | cytosol, nucleus, plasma membrane | 51.49 | 30.53 |
| PGSC0003DMT400055769 | Potato | extracellular | 54.1 | 30.4 |
| KRH06594 | Soybean | mitochondrion | 55.6 | 30.35 |
| VIT_15s0046g02000.t01 | Wine grape | extracellular, vacuole | 54.1 | 30.27 |
| Solyc08g081480.2.1 | Tomato | extracellular | 54.48 | 30.23 |
| KRH41230 | Soybean | nucleus | 55.22 | 29.96 |
| KRH48076 | Soybean | extracellular | 52.99 | 29.96 |
| KRH59960 | Soybean | nucleus | 54.85 | 29.88 |
| Solyc05g049980.2.1 | Tomato | extracellular | 54.1 | 29.84 |
| VIT_02s0025g00260.t01 | Wine grape | extracellular | 53.36 | 29.79 |
| PGSC0003DMT400000538 | Potato | extracellular | 51.49 | 29.05 |
| AT4G23500.1 | Thale cress | extracellular, plasma membrane | 52.61 | 28.48 |
| Bra019299.1-P | Field mustard | extracellular, plasma membrane | 51.87 | 28.19 |
| Bra013697.1-P | Field mustard | extracellular, plasma membrane | 51.87 | 28.19 |
| Solyc01g094970.2.1 | Tomato | extracellular | 40.3 | 26.54 |
| AT3G61490.4 | Thale cress | cytosol, plastid | 55.22 | 25.13 |
| Solyc06g030520.1.1 | Tomato | cytosol | 10.07 | 23.68 |
| TraesCS4A01G358700.1 | Wheat | extracellular | 36.57 | 21.83 |
| PGSC0003DMT400065330 | Potato | nucleus | 15.67 | 20.49 |
| TraesCS4A01G168800.1 | Wheat | extracellular, golgi, vacuole | 32.84 | 19.26 |
| TraesCS5A01G090800.2 | Wheat | extracellular, golgi, mitochondrion, plastid | 32.84 | 18.57 |
| TraesCS7A01G323800.3 | Wheat | plastid | 33.58 | 18.56 |
| TraesCS6A01G340000.1 | Wheat | mitochondrion | 33.58 | 18.18 |
| TraesCS5A01G212900.1 | Wheat | plastid | 35.07 | 17.7 |
| KRH33610 | Soybean | plastid | 7.84 | 11.67 |
| TraesCS5A01G264400.2 | Wheat | unclear | 15.67 | 9.19 |
| TraesCS3A01G393600.1 | Wheat | extracellular | 15.3 | 9.03 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G019500.1 | EnsemblPlantsGene:TraesCS7A01G019500 | Gene3D:2.160.20.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 |
| InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | PANTHER:PTHR31339 | PANTHER:PTHR31339:SF7 | PFAM:PF00295 | SUPFAM:SSF51126 |
| MapMan:50.3.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7A:+:7965466..7966842
Molecular Weight (calculated)
29075.4 Da
IEP (calculated)
5.125
GRAVY (calculated)
-0.276
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRTHDILSG HSNQTHPKSP NTDGLNPDSC SQVRIEDCYV VTGDDCMAIK SGWDEYGIVV DMPSEHIVMR RLTRVSPTNA AIALGSEMSG SIRDVRAEDI
101: TAIGTESAVQ IKTAVGRGAY VRDVYARRMR LDGMKRVFWM TGDYKSHPDD DYDKTDVPVV ENISYQDVVA TGVWKEAARM QGIQSAPFKG ICMANVTAEM
201: IKERKVSWNC ANVEGVLAGV TPVPCTPLQG THAGSCPFPT DTLTVDQITV QQCSYSVASA TTSMAGTE
101: TAIGTESAVQ IKTAVGRGAY VRDVYARRMR LDGMKRVFWM TGDYKSHPDD DYDKTDVPVV ENISYQDVVA TGVWKEAARM QGIQSAPFKG ICMANVTAEM
201: IKERKVSWNC ANVEGVLAGV TPVPCTPLQG THAGSCPFPT DTLTVDQITV QQCSYSVASA TTSMAGTE
001: MKNILACIVT IITLSNLITI SQGRRVSQSF ETFEYTAIIC RSHSASITEY GGVGDGKTLN TKAFQSAVDH LSQYSSEGGA QLFVPAGKWL TGSFNLTSHF
101: TLFLHKDAIL LAAQDLNEYP ILKALPSYGR GRDAAGGRFA SLIFGTNLSD VIITGNNGTI DGQGSFWWQK FHGGKLKYTR PYLIELMFSD TIQISNLTFL
201: DSPSWNIHPV YSSNIIVKGV TIIAPVKSPN TDGINPDSCT NTRIEDCYII SGDDCIAVKS GWDEYGISFG MPTKHLVIRR LTCISPYSAA IALGSEMSGG
301: IEDVRAEDIT AYQTESGVRI KTAVGRGAFV KNIYVKGMNL HTMKWVFWMT GNYKAHADSH YDPHALPEIT GINYRDIVAE NVSMAGRLEG ISGDPFTGIC
401: ISNATISMAA KHKKAIWMCS DVEGVTSGVD PKPCDLLDGQ ESETTKKKMI DGGCDFPTDV LEIDNVELKT CSYQMS
101: TLFLHKDAIL LAAQDLNEYP ILKALPSYGR GRDAAGGRFA SLIFGTNLSD VIITGNNGTI DGQGSFWWQK FHGGKLKYTR PYLIELMFSD TIQISNLTFL
201: DSPSWNIHPV YSSNIIVKGV TIIAPVKSPN TDGINPDSCT NTRIEDCYII SGDDCIAVKS GWDEYGISFG MPTKHLVIRR LTCISPYSAA IALGSEMSGG
301: IEDVRAEDIT AYQTESGVRI KTAVGRGAFV KNIYVKGMNL HTMKWVFWMT GNYKAHADSH YDPHALPEIT GINYRDIVAE NVSMAGRLEG ISGDPFTGIC
401: ISNATISMAA KHKKAIWMCS DVEGVTSGVD PKPCDLLDGQ ESETTKKKMI DGGCDFPTDV LEIDNVELKT CSYQMS
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS88]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.