Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400055769 | Potato | extracellular | 95.27 | 97.06 |
| Solyc01g094970.2.1 | Tomato | extracellular | 68.72 | 82.06 |
| VIT_15s0046g02000.t01 | Wine grape | extracellular, vacuole | 73.05 | 74.11 |
| Bra007609.1-P | Field mustard | extracellular | 71.19 | 73.62 |
| CDY65355 | Canola | extracellular | 71.4 | 73.52 |
| CDY48913 | Canola | extracellular | 70.99 | 73.25 |
| KRH48075 | Soybean | extracellular | 72.22 | 72.82 |
| KRH00832 | Soybean | nucleus | 72.22 | 72.52 |
| KRH40394 | Soybean | extracellular, nucleus | 72.22 | 72.52 |
| KRH06594 | Soybean | mitochondrion | 72.43 | 71.69 |
| KRH48076 | Soybean | extracellular | 68.93 | 70.68 |
| Solyc08g081480.2.1 | Tomato | extracellular | 68.52 | 68.94 |
| GSMUA_Achr4P05580_001 | Banana | cytosol | 42.59 | 66.35 |
| Os06t0106800-01 | Rice | extracellular | 63.17 | 63.3 |
| GSMUA_Achr11P... | Banana | cytosol | 40.33 | 62.82 |
| GSMUA_Achr11P... | Banana | cytosol | 39.3 | 62.62 |
| TraesCS5A01G513600.1 | Wheat | extracellular | 57.0 | 61.42 |
| EER89047 | Sorghum | extracellular, vacuole | 62.35 | 61.21 |
| GSMUA_Achr11P... | Banana | extracellular | 59.88 | 61.13 |
| Solyc03g007950.2.1 | Tomato | extracellular | 58.02 | 60.39 |
| Zm00001d035899_P001 | Maize | extracellular | 60.29 | 60.29 |
| Os03t0124900-01 | Rice | extracellular | 56.58 | 60.04 |
| EER95599 | Sorghum | extracellular | 56.79 | 59.61 |
| GSMUA_Achr3P27460_001 | Banana | extracellular, plastid | 24.49 | 59.2 |
| Zm00001d027441_P001 | Maize | plasma membrane | 56.38 | 59.18 |
| AT3G61490.4 | Thale cress | cytosol, plastid | 70.58 | 58.23 |
| TraesCS7D01G016300.2 | Wheat | extracellular | 58.44 | 58.08 |
| TraesCS4B01G344700.1 | Wheat | extracellular | 56.58 | 56.58 |
| TraesCS7A01G019900.1 | Wheat | cytosol | 30.45 | 55.22 |
| TraesCSU01G066000.1 | Wheat | golgi, unclear | 58.85 | 54.37 |
| TraesCS7A01G019400.1 | Wheat | extracellular, plastid, vacuole | 58.02 | 54.13 |
| TraesCS7A01G019500.1 | Wheat | cytosol | 29.84 | 54.1 |
| Zm00001d018548_P001 | Maize | cytosol | 25.51 | 53.45 |
| Zm00001d010681_P001 | Maize | cytosol | 30.45 | 52.3 |
| GSMUA_Achr7P24560_001 | Banana | cytosol, nucleus, vacuole | 17.9 | 49.43 |
| Solyc06g009790.2.1 | Tomato | extracellular | 41.36 | 43.98 |
| Solyc08g082170.2.1 | Tomato | nucleus | 41.98 | 43.68 |
| TraesCS7A01G019700.1 | Wheat | cytosol | 10.91 | 43.09 |
| Solyc09g075460.2.1 | Tomato | extracellular | 41.36 | 41.88 |
| Solyc06g060170.2.1 | Tomato | cytosol, golgi, plasma membrane | 40.74 | 40.57 |
| Solyc06g030520.1.1 | Tomato | cytosol | 9.05 | 38.6 |
| Solyc03g117750.2.1 | Tomato | extracellular, golgi | 38.27 | 38.19 |
| Solyc07g042160.2.1 | Tomato | nucleus | 38.68 | 38.06 |
| Solyc12g009210.1.1 | Tomato | nucleus | 37.65 | 36.97 |
| Solyc03g051770.2.1 | Tomato | cytosol | 13.79 | 21.27 |
Protein Annotations
| EnsemblPlants:Solyc05g049980.2.1 | EnsemblPlantsGene:Solyc05g049980.2 | Gene3D:2.160.20.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | GO:GO:0016798 | InterPro:Glyco_hydro_28 |
| InterPro:IPR012334 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | PANTHER:PTHR31339 | PANTHER:PTHR31339:SF7 | PFAM:PF00295 |
| SUPFAM:SSF51126 | TMHMM:TMhelix | UniParc:UPI0002766E82 | UniProt:K4C131 | MapMan:50.3.2 | : |
Description
No Description!
Coordinates
chr5:-:59823347..59826939
Molecular Weight (calculated)
53398.7 Da
IEP (calculated)
5.759
GRAVY (calculated)
-0.153
Length
486 amino acids
Sequence
(BLAST)
(BLAST)
001: MHKIPLSSQM EKTSWLLVVV LGMVVISLLG GAEGRKSRIL DESSYYDLEY SAISCRAHSA SITDFGGVGD GKTLNTKAFQ EAVNRLSQYA SDGGAQLIVP
101: AGQWLTGSFN LTSHFTLFLH KDAILLASQD INEWAVIDPL PSYGHGRDTS GGRYISLLFG TNLTDVIITG ENGTIDGQGE IWWQKFHSKK LKYTRPYLIE
201: IMHSDNIQIS HITLVNSPSW NIHPVYSSNI IVQGITILAP VKSPNTDGIN PDSCTNMKIE DNYIVSGDDC VAVKSGWDEY GINYGMPTSQ LIIRRLTCIS
301: PYSAAIALGS EMSGGIQDVR AEDITAINTE SGVRIKTGVG RGGFVRDVYV KGMTLHTMKW VFWMTGNYGQ HADTHWDPNA LPEIKGINYR DVVAENVSMA
401: ARLEGISGDP FTGICISNVT ISMAKKAKKY PWTCTDIEGI TSGVQPPPCQ LLPDQGPEKT EMCSFPTENL AIDNIEMQRC SYRLNY
101: AGQWLTGSFN LTSHFTLFLH KDAILLASQD INEWAVIDPL PSYGHGRDTS GGRYISLLFG TNLTDVIITG ENGTIDGQGE IWWQKFHSKK LKYTRPYLIE
201: IMHSDNIQIS HITLVNSPSW NIHPVYSSNI IVQGITILAP VKSPNTDGIN PDSCTNMKIE DNYIVSGDDC VAVKSGWDEY GINYGMPTSQ LIIRRLTCIS
301: PYSAAIALGS EMSGGIQDVR AEDITAINTE SGVRIKTGVG RGGFVRDVYV KGMTLHTMKW VFWMTGNYGQ HADTHWDPNA LPEIKGINYR DVVAENVSMA
401: ARLEGISGDP FTGICISNVT ISMAKKAKKY PWTCTDIEGI TSGVQPPPCQ LLPDQGPEKT EMCSFPTENL AIDNIEMQRC SYRLNY
001: MSLFAITSAF SEDNVTAISS NQLIPLNDKI IANLIRSPNT QTKSLNLASS FLHSLSAYKY SYSLLLTSSS NHLASPHSQR AHKSQVILFL SLKHKHTQMY
101: KQTHHFCFQI YKTMKNILAC IVTIITLSNL ITISQGRRVS QSFETFEYTA IICRSHSASI TEYGGVGDGK TLNTKAFQSA VDHLSQYSSE GGAQLFVPAG
201: KWLTGSFNLT SHFTLFLHKD AILLAAQDLN EYPILKALPS YGRGRDAAGG RFASLIFGTN LSDVIITGNN GTIDGQGSFW WQKFHGGKLK YTRPYLIELM
301: FSDTIQISNL TFLDSPSWNI HPVYSSNIIV KGVTIIAPVK SPNTDGINPD SCTNTRIEDC YIISGDDCIA VKSGWDEYGI SFGMPTKHLV IRRLTCISPY
401: SAAIALGSEM SGGIEDVRAE DITAYQTESG VRIKTAVGRG AFVKNIYVKG MNLHTMKWVF WMTGNYKAHA DSHYDPHALP EITGINYRDI VAENVSMAGR
501: LEGISGDPFT GICISNATIS MAAKHKKAIW MCSDVEGVTS GVDPKPCDLL DGQESETTKK KMIDGGCDFP TDVLEIDNVE LKTCSYQMS
101: KQTHHFCFQI YKTMKNILAC IVTIITLSNL ITISQGRRVS QSFETFEYTA IICRSHSASI TEYGGVGDGK TLNTKAFQSA VDHLSQYSSE GGAQLFVPAG
201: KWLTGSFNLT SHFTLFLHKD AILLAAQDLN EYPILKALPS YGRGRDAAGG RFASLIFGTN LSDVIITGNN GTIDGQGSFW WQKFHGGKLK YTRPYLIELM
301: FSDTIQISNL TFLDSPSWNI HPVYSSNIIV KGVTIIAPVK SPNTDGINPD SCTNTRIEDC YIISGDDCIA VKSGWDEYGI SFGMPTKHLV IRRLTCISPY
401: SAAIALGSEM SGGIEDVRAE DITAYQTESG VRIKTAVGRG AFVKNIYVKG MNLHTMKWVF WMTGNYKAHA DSHYDPHALP EITGINYRDI VAENVSMAGR
501: LEGISGDPFT GICISNATIS MAAKHKKAIW MCSDVEGVTS GVDPKPCDLL DGQESETTKK KMIDGGCDFP TDVLEIDNVE LKTCSYQMS
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS88]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.