Factsheet for Solyc01g094970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400094734	Potato	cytosol	24.57	95.24
PGSC0003DMT400000538	Potato	extracellular	95.58	81.89
Solyc05g049980.2.1	Tomato	extracellular	82.06	68.72
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	74.94	63.67
KRH48075	Soybean	extracellular	74.69	63.07
KRH48076	Soybean	extracellular	71.99	61.81
KRH40394	Soybean	extracellular, nucleus	73.46	61.78
KRH00832	Soybean	nucleus	72.97	61.36
CDY65355	Canola	extracellular	71.01	61.23
KRH06594	Soybean	mitochondrion	73.71	61.1
Bra007609.1-P	Field mustard	extracellular	70.52	61.06
CDY48913	Canola	extracellular	70.52	60.93
GSMUA_Achr4P05580_001	Banana	cytosol	43.49	56.73
Solyc08g081480.2.1	Tomato	extracellular	66.58	56.11
GSMUA_Achr11P...	Banana	extracellular	63.39	54.2
Solyc03g007950.2.1	Tomato	extracellular	62.16	54.18
Os03t0124900-01	Rice	extracellular	59.95	53.28
TraesCS5A01G513600.1	Wheat	extracellular	58.72	52.99
EER89047	Sorghum	extracellular, vacuole	64.37	52.93
Os06t0106800-01	Rice	extracellular	62.9	52.78
GSMUA_Achr11P...	Banana	cytosol	40.29	52.56
EER95599	Sorghum	extracellular	59.46	52.27
Zm00001d035899_P001	Maize	extracellular	62.16	52.06
GSMUA_Achr11P...	Banana	cytosol	38.82	51.8
Zm00001d018548_P001	Maize	cytosol	29.48	51.72
Zm00001d027441_P001	Maize	plasma membrane	57.99	50.97
Zm00001d010681_P001	Maize	cytosol	34.89	50.18
AT3G61490.4	Thale cress	cytosol, plastid	71.5	49.41
TraesCS7D01G016300.2	Wheat	extracellular	58.97	49.08
TraesCS4B01G344700.1	Wheat	extracellular	58.48	48.97
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	19.9	46.02
TraesCS7A01G019400.1	Wheat	extracellular, plastid, vacuole	58.48	45.68
TraesCSU01G066000.1	Wheat	golgi, unclear	58.97	45.63
Solyc06g009790.2.1	Tomato	extracellular	47.17	42.01
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	20.64	41.79
Solyc08g082170.2.1	Tomato	nucleus	47.42	41.33
TraesCS7A01G019900.1	Wheat	cytosol	27.03	41.04
TraesCS7A01G019500.1	Wheat	cytosol	26.54	40.3
Solyc09g075460.2.1	Tomato	extracellular	46.44	39.38
Solyc06g060170.2.1	Tomato	cytosol, golgi, plasma membrane	46.44	38.73
Solyc07g042160.2.1	Tomato	nucleus	42.26	34.82
Solyc12g009210.1.1	Tomato	nucleus	42.01	34.55
Solyc03g117750.2.1	Tomato	extracellular, golgi	41.03	34.29
Solyc06g030520.1.1	Tomato	cytosol	8.85	31.58
TraesCS7A01G019700.1	Wheat	cytosol	5.65	18.7
Solyc03g051770.2.1	Tomato	cytosol	13.02	16.83

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:K4AZN7
PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF7	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc01g094970.2	EnsemblPlants:Solyc01g094970.2.1	TMHMM:TMhelix
UniParc:UPI0002768D51	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:86363079..86366719

Molecular Weight (calculated)

44542.4 Da

IEP (calculated)

6.509

GRAVY (calculated)

-0.049

Length

407 amino acids

Sequence
(BLAST)

001: MMVKTDWLLV VLLGLVLLIL EGAEGRKERI LGGSPYELAY SAINCRKHSA SIKDFGGIGD GTTLNTEAFQ KAVNQLSKYA SDGGAQLVIP AGHWLTGSFN
101: LTSHFTLFLH KDAVLLASQE INQWPLIDPL PSYGHGRDAP GGRYISLIFG TNLTDVIITG ENGTIDGQGA LWWQQFHLNK LKYTRPYLIE LMHSNKIQIS
201: NLTLLNSPSW NIHPVYSSNI IINGITILAP VTSPNTDGID PDSCTNIRLE DNYIVSGDDC VAVKSGWDEY GIKYGRPTSH LIIKRLTCIS PYSAAIALGS
301: EMSGGIQDVR IQDITAIQTE SGIRIKTGVG QGGYVKDIYV KGMKLHTMKW VFWMTGNYGS HADTHWDPKA LPEIKGINYR DVVAENVSMA GQLDGISGDP
401: FTGIFIT

Best Arabidopsis Sequence Match ( AT3G61490.4 )
(BLAST)

001: MSLFAITSAF SEDNVTAISS NQLIPLNDKI IANLIRSPNT QTKSLNLASS FLHSLSAYKY SYSLLLTSSS NHLASPHSQR AHKSQVILFL SLKHKHTQMY
101: KQTHHFCFQI YKTMKNILAC IVTIITLSNL ITISQGRRVS QSFETFEYTA IICRSHSASI TEYGGVGDGK TLNTKAFQSA VDHLSQYSSE GGAQLFVPAG
201: KWLTGSFNLT SHFTLFLHKD AILLAAQDLN EYPILKALPS YGRGRDAAGG RFASLIFGTN LSDVIITGNN GTIDGQGSFW WQKFHGGKLK YTRPYLIELM
301: FSDTIQISNL TFLDSPSWNI HPVYSSNIIV KGVTIIAPVK SPNTDGINPD SCTNTRIEDC YIISGDDCIA VKSGWDEYGI SFGMPTKHLV IRRLTCISPY
401: SAAIALGSEM SGGIEDVRAE DITAYQTESG VRIKTAVGRG AFVKNIYVKG MNLHTMKWVF WMTGNYKAHA DSHYDPHALP EITGINYRDI VAENVSMAGR
501: LEGISGDPFT GICISNATIS MAAKHKKAIW MCSDVEGVTS GVDPKPCDLL DGQESETTKK KMIDGGCDFP TDVLEIDNVE LKTCSYQMS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS88]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.