Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
25724908
|
msms PMID:
25724908
doi
From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH48075 | Soybean | extracellular | 88.19 | 86.72 |
| KRH06594 | Soybean | mitochondrion | 87.97 | 84.93 |
| KRH40394 | Soybean | extracellular, nucleus | 81.43 | 79.75 |
| KRH00832 | Soybean | nucleus | 80.8 | 79.13 |
| PGSC0003DMT400094734 | Potato | cytosol | 17.09 | 77.14 |
| VIT_15s0046g02000.t01 | Wine grape | extracellular, vacuole | 74.89 | 74.11 |
| Solyc01g094970.2.1 | Tomato | extracellular | 61.81 | 71.99 |
| PGSC0003DMT400055769 | Potato | extracellular | 71.73 | 71.28 |
| KRG91587 | Soybean | cytosol, extracellular, plastid | 36.29 | 70.49 |
| PGSC0003DMT400000538 | Potato | extracellular | 69.62 | 69.47 |
| Solyc05g049980.2.1 | Tomato | extracellular | 70.68 | 68.93 |
| KRH59960 | Soybean | nucleus | 71.31 | 68.7 |
| CDY65355 | Canola | extracellular | 67.93 | 68.22 |
| Bra007609.1-P | Field mustard | extracellular | 67.51 | 68.09 |
| KRH41230 | Soybean | nucleus | 70.89 | 68.02 |
| CDY48913 | Canola | extracellular | 67.51 | 67.94 |
| KRH35240 | Soybean | extracellular | 66.03 | 66.45 |
| KRH35239 | Soybean | extracellular, plasma membrane, plastid | 66.46 | 65.62 |
| KRH35238 | Soybean | extracellular | 63.71 | 64.81 |
| GSMUA_Achr4P05580_001 | Banana | cytosol | 42.62 | 64.74 |
| KRH38380 | Soybean | extracellular | 63.71 | 63.45 |
| KRH08861 | Soybean | extracellular | 62.66 | 62.26 |
| GSMUA_Achr11P... | Banana | cytosol | 40.51 | 61.54 |
| GSMUA_Achr11P... | Banana | cytosol | 39.24 | 60.98 |
| GSMUA_Achr11P... | Banana | extracellular | 60.97 | 60.71 |
| TraesCS5A01G513600.1 | Wheat | extracellular | 56.12 | 58.98 |
| Os06t0106800-01 | Rice | extracellular | 60.13 | 58.76 |
| EER95599 | Sorghum | extracellular | 57.38 | 58.75 |
| EER89047 | Sorghum | extracellular, vacuole | 60.97 | 58.38 |
| Zm00001d035899_P001 | Maize | extracellular | 59.7 | 58.23 |
| GSMUA_Achr3P27460_001 | Banana | extracellular, plastid | 24.68 | 58.21 |
| Os03t0124900-01 | Rice | extracellular | 55.7 | 57.64 |
| Zm00001d027441_P001 | Maize | plasma membrane | 56.12 | 57.45 |
| TraesCS4B01G344700.1 | Wheat | extracellular | 56.75 | 55.35 |
| AT3G61490.4 | Thale cress | cytosol, plastid | 68.78 | 55.35 |
| TraesCS7D01G016300.2 | Wheat | extracellular | 55.91 | 54.19 |
| TraesCS7A01G019900.1 | Wheat | cytosol | 30.59 | 54.1 |
| Zm00001d018548_P001 | Maize | cytosol | 25.95 | 53.02 |
| TraesCS7A01G019500.1 | Wheat | cytosol | 29.96 | 52.99 |
| Zm00001d010681_P001 | Maize | cytosol | 30.59 | 51.24 |
| TraesCS7A01G019400.1 | Wheat | extracellular, plastid, vacuole | 55.91 | 50.86 |
| TraesCSU01G066000.1 | Wheat | golgi, unclear | 56.33 | 50.76 |
| KRH69147 | Soybean | nucleus | 46.84 | 47.84 |
| KRG96607 | Soybean | extracellular | 46.62 | 47.22 |
| KRH33649 | Soybean | nucleus | 45.99 | 46.98 |
| KRH68340 | Soybean | nucleus | 46.2 | 46.79 |
| GSMUA_Achr7P24560_001 | Banana | cytosol, nucleus, vacuole | 16.67 | 44.89 |
| KRH45957 | Soybean | extracellular | 41.77 | 44.7 |
| KRG99037 | Soybean | nucleus | 41.56 | 44.57 |
| KRH50791 | Soybean | extracellular | 42.19 | 44.54 |
| KRH37050 | Soybean | extracellular, vacuole | 42.41 | 44.47 |
| KRH02302 | Soybean | extracellular | 41.98 | 44.32 |
| KRH69264 | Soybean | extracellular | 42.19 | 43.96 |
| KRH14547 | Soybean | extracellular | 41.35 | 43.95 |
| KRH31843 | Soybean | extracellular | 41.77 | 43.42 |
| KRH12027 | Soybean | extracellular, vacuole | 41.77 | 42.04 |
| KRH73576 | Soybean | extracellular | 24.05 | 41.3 |
| KRH53903 | Soybean | extracellular, plasma membrane, plastid | 40.51 | 40.25 |
| KRG96478 | Soybean | endoplasmic reticulum, extracellular | 40.51 | 39.83 |
| KRH55874 | Soybean | cytosol | 5.49 | 39.39 |
| KRH68221 | Soybean | extracellular | 40.93 | 39.03 |
| TraesCS7A01G019700.1 | Wheat | cytosol | 10.13 | 39.02 |
| KRH19342 | Soybean | endoplasmic reticulum | 40.3 | 38.9 |
| KRH02590 | Soybean | extracellular, golgi, mitochondrion, plastid | 40.3 | 38.82 |
| KRH12568 | Soybean | plastid | 37.55 | 36.4 |
| KRH37525 | Soybean | extracellular, plasma membrane | 37.55 | 36.03 |
| Solyc06g030520.1.1 | Tomato | cytosol | 8.23 | 34.21 |
| PGSC0003DMT400065330 | Potato | nucleus | 12.66 | 29.27 |
| KRH33610 | Soybean | plastid | 9.07 | 23.89 |
| KRG95330 | Soybean | extracellular, plasma membrane, vacuole | 23.21 | 23.61 |
Protein Annotations
| EntrezGene:100818998 | Gene3D:2.160.20.10 | MapMan:50.3.2 | EMBL:ACUP02004202 | EnsemblPlantsGene:GLYMA_07G067000 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 |
| GO:GO:0016798 | InterPro:Glyco_hydro_28 | UniProt:I1KI61 | InterPro:IPR012334 | EnsemblPlants:KRH48076 | ProteinID:KRH48076 |
| ProteinID:KRH48076.1 | PFAM:PF00295 | PANTHER:PTHR31339 | PANTHER:PTHR31339:SF12 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence |
| SUPFAM:SSF51126 | SignalP:SignalP-noTM | UniParc:UPI00023C7D27 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr7:-:6032415..6036498
Molecular Weight (calculated)
52102.2 Da
IEP (calculated)
7.632
GRAVY (calculated)
-0.149
Length
474 amino acids
Sequence
(BLAST)
(BLAST)
001: MRVQVIRLVC ALLLATLVSS EATERKAKIV DTSFEYNALN CRAHSASLTD FGGVGDGNTS NTKAFQSAIS YLSQYASKGG AQLYVPAGKW LTGSFSMTSH
101: FTLYLNKDAV LLASQDMNEW PVIKPLPSYG RGRDAPAGRY TSFIFGTNLT DVIVTGDNGT IDGQGAFWWQ QFYNKRLNYT RPYLIELMFS DKIQISNLTF
201: LNSPSWNVHP VYSSNIIIKG LTIIAPVPSP NTDGINPDSC TNTRIEDCYI VSGDDCVAVK SGWDEFGIKF GWPTKQLVIR RLTCISPQSA AIALGSEMSG
301: GIQDVRAEDI TAIHTESGVR IKTSIGRGGY VKDIYVRRMT MHTMKWAFWM TGNYGSYANN SHYDPKALPE IKGINYRDVV ADNVTMAATL EGISNSPFTG
401: ICIANVTISM ADKANEKPWT CTDIEGITSG VTPKPCNSLL DKGPEKIKTC DFPPEILPID LLELKKCTYN IKHA
101: FTLYLNKDAV LLASQDMNEW PVIKPLPSYG RGRDAPAGRY TSFIFGTNLT DVIVTGDNGT IDGQGAFWWQ QFYNKRLNYT RPYLIELMFS DKIQISNLTF
201: LNSPSWNVHP VYSSNIIIKG LTIIAPVPSP NTDGINPDSC TNTRIEDCYI VSGDDCVAVK SGWDEFGIKF GWPTKQLVIR RLTCISPQSA AIALGSEMSG
301: GIQDVRAEDI TAIHTESGVR IKTSIGRGGY VKDIYVRRMT MHTMKWAFWM TGNYGSYANN SHYDPKALPE IKGINYRDVV ADNVTMAATL EGISNSPFTG
401: ICIANVTISM ADKANEKPWT CTDIEGITSG VTPKPCNSLL DKGPEKIKTC DFPPEILPID LLELKKCTYN IKHA
001: MKNILACIVT IITLSNLITI SQGRRVSQSF ETFEYTAIIC RSHSASITEY GGVGDGKTLN TKAFQSAVDH LSQYSSEGGA QLFVPAGKWL TGSFNLTSHF
101: TLFLHKDAIL LAAQDLNEYP ILKALPSYGR GRDAAGGRFA SLIFGTNLSD VIITGNNGTI DGQGSFWWQK FHGGKLKYTR PYLIELMFSD TIQISNLTFL
201: DSPSWNIHPV YSSNIIVKGV TIIAPVKSPN TDGINPDSCT NTRIEDCYII SGDDCIAVKS GWDEYGISFG MPTKHLVIRR LTCISPYSAA IALGSEMSGG
301: IEDVRAEDIT AYQTESGVRI KTAVGRGAFV KNIYVKGMNL HTMKWVFWMT GNYKAHADSH YDPHALPEIT GINYRDIVAE NVSMAGRLEG ISGDPFTGIC
401: ISNATISMAA KHKKAIWMCS DVEGVTSGVD PKPCDLLDGQ ESETTKKKMI DGGCDFPTDV LEIDNVELKT CSYQMS
101: TLFLHKDAIL LAAQDLNEYP ILKALPSYGR GRDAAGGRFA SLIFGTNLSD VIITGNNGTI DGQGSFWWQK FHGGKLKYTR PYLIELMFSD TIQISNLTFL
201: DSPSWNIHPV YSSNIIVKGV TIIAPVKSPN TDGINPDSCT NTRIEDCYII SGDDCIAVKS GWDEYGISFG MPTKHLVIRR LTCISPYSAA IALGSEMSGG
301: IEDVRAEDIT AYQTESGVRI KTAVGRGAFV KNIYVKGMNL HTMKWVFWMT GNYKAHADSH YDPHALPEIT GINYRDIVAE NVSMAGRLEG ISGDPFTGIC
401: ISNATISMAA KHKKAIWMCS DVEGVTSGVD PKPCDLLDGQ ESETTKKKMI DGGCDFPTDV LEIDNVELKT CSYQMS
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS88]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.