CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
mitochondrion 3
extracellular 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02590	Soybean	extracellular, golgi, mitochondrion, plastid	96.74	96.54
VIT_11s0016g00720.t01	Wine grape	extracellular, peroxisome, plastid	81.87	81.54
KRH12568	Soybean	plastid	79.23	79.55
KRH37525	Soybean	extracellular, plasma membrane	79.43	78.95
PGSC0003DMT400007594	Potato	extracellular	76.99	76.36
Solyc07g042160.2.1	Tomato	nucleus	76.58	76.11
Solyc12g009210.1.1	Tomato	nucleus	76.58	75.96
GSMUA_Achr5P22120_001	Banana	extracellular	74.34	74.19
GSMUA_Achr9P18190_001	Banana	mitochondrion	74.13	74.13
AT1G19170.1	Thale cress	cytosol, extracellular, mitochondrion, peroxisome	76.17	73.91
GSMUA_Achr3P10280_001	Banana	mitochondrion	72.1	73.9
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	75.15	72.78
CDX96676	Canola	extracellular, golgi, plastid	75.15	72.78
CDX83782	Canola	extracellular, golgi, plastid	75.15	72.78
Os02t0781000-01	Rice	extracellular	40.94	70.53
TraesCS6B01G371200.2	Wheat	mitochondrion	70.47	69.9
TraesCS6A01G340000.1	Wheat	mitochondrion	70.26	69.7
TraesCS6D01G320600.1	Wheat	mitochondrion	70.26	69.7
EES05901	Sorghum	extracellular, golgi	69.25	68.0
Zm00001d052103_P001	Maize	plasma membrane	67.82	67.27
GSMUA_Achr11P...	Banana	mitochondrion	66.4	66.4
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	63.75	62.73
KRH55874	Soybean	cytosol	8.35	62.12
KRG99037	Soybean	nucleus	41.14	45.7
KRH45957	Soybean	extracellular	40.73	45.15
KRH68340	Soybean	nucleus	42.77	44.87
KRH33649	Soybean	nucleus	42.36	44.83
KRG96607	Soybean	extracellular	42.57	44.66
KRH69147	Soybean	nucleus	42.16	44.61
KRH73576	Soybean	extracellular	25.05	44.57
KRH14547	Soybean	extracellular	39.92	43.95
KRH35240	Soybean	extracellular	41.75	43.52
KRH35239	Soybean	extracellular, plasma membrane, plastid	42.36	43.33
KRH35238	Soybean	extracellular	40.33	42.49
KRH08861	Soybean	extracellular	40.73	41.93
KRG91587	Soybean	cytosol, extracellular, plastid	20.77	41.8
KRH48075	Soybean	extracellular	40.94	41.7
KRH38380	Soybean	extracellular	40.33	41.6
KRH59960	Soybean	nucleus	40.73	40.65
KRH40394	Soybean	extracellular, nucleus	39.92	40.5
KRH00832	Soybean	nucleus	39.92	40.5
KRH50791	Soybean	extracellular	36.86	40.31
KRH48076	Soybean	extracellular	38.9	40.3
KRH41230	Soybean	nucleus	40.53	40.28
KRH53903	Soybean	extracellular, plasma membrane, plastid	39.1	40.25
KRH06594	Soybean	mitochondrion	39.92	39.92
KRH02302	Soybean	extracellular	36.46	39.87
KRH37050	Soybean	extracellular, vacuole	36.66	39.82
KRH12027	Soybean	extracellular, vacuole	37.47	39.07
KRH69264	Soybean	extracellular	36.05	38.9
KRG96478	Soybean	endoplasmic reticulum, extracellular	37.68	38.38
KRH31843	Soybean	extracellular	35.44	38.16
KRH68221	Soybean	extracellular	37.68	37.22
KRH33610	Soybean	plastid	8.96	24.44
KRG95330	Soybean	extracellular, plasma membrane, vacuole	23.01	24.25

Protein Annotations

EntrezGene:100801914	Gene3D:2.160.20.10	MapMan:50.3.2	UniProt:A0A0R4J4Z1	EMBL:ACUP02008176	EnsemblPlantsGene:GLYMA_13G111900
GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	EnsemblPlants:KRH19342
ProteinID:KRH19342	ProteinID:KRH19342.1	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF21	InterPro:PbH1
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI0001B63BB4
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:22524471..22532116

Molecular Weight (calculated)

54966.3 Da

IEP (calculated)

9.139

GRAVY (calculated)

-0.157

Length

491 amino acids

Sequence
(BLAST)

001: MVENSTLGRF HHQRLDLRRW VPAFFTSHKT LLTFLWIAAF ASVFLWQRNI AGGFLVYGGI PARPMPMLRP MAFNLTDFGG VGDGVTLNTE AFKRAVSAVS
101: KFGKKGGAQL NVPPGRWLTA PFNLTSHMTL FLAEDAVILG IDDEKYWPLM PPLPSYGYGR EHPGPRYGSL IHGQHLKDVV ITGHNGTING QGQTWWKKYR
201: QKRLNHTRGP LVQIMFSSDI VITNITLRDS PFWTLHPYDC KNITIKGVTI LAPVFGAPNT DGIDPDSCED MLIEDCYISV GDDAIAIKSG WDQYGIAYGR
301: PSMNIMIRNL VVRSMVSAGI SIGSEMSGGV SNVMVENILI WDSRRGVRIK TARGRGAYVR QITYRNITFE NVRVGIVMKT DYNEHPDDGY DPMALPILRD
401: ISFTTVHGQG VRVPVRIHGS EEIPVRNVTF QDMSVGLTYK KKHIFQCAFV QGRVIGTIYP APCENLDRYN EQGQLVKHSA SQNVTDIDYD I

Best Arabidopsis Sequence Match ( AT1G19170.1 )
(BLAST)

001: MVENLFPSRF QFHLQRLDPK RRLTSLLASH KTLFTFLWIT AFGSVFLWQR TAYIEGGSGT GPVGGKFTIF GKIKPIQPIP RLRPVVFDLK DFGGVGDGFT
101: LNTEAFERAV ISISKLGGSS GGGQLNVPPG RWLTAPFNLT SHMTLFLAED SEILGVEDEK YWPLMPPLPS YGYGRERPGP RYGSLIHGQN LKDIVITGHN
201: GTINGQGQSW WKKHQRRLLN YTRGPLVQIM WSSDIVIANI TMRDSPFWTL HPYDCKNVTI RNVTILAPVT GAPNTDGIDP DSCEDMVIED CYISTGDDAI
301: AIKSGWDQFG IAYGRPSTNI LIRNLVVRSV ISAGVSIGSE MSGGISNVTI ENLLIWNSRR GIRIKTAPGR GGYIRNITYK NLTLDNVRVG IVIKTDYNEH
401: ADDNYDRKAY PILSGFSFAG IHGQGVRVPV RIHGSEQIPV RNVTFRDMSV GLTYKKKHIF QCSFVKGRVF GSIFPRPCEN FDVYDEEGRL VKPAAESNVA
501: DIDYDI

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IE17]
SUBAcon: [mitochondrion,peroxisome,extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.