Factsheet for Solyc07g042160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 1
extracellular 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g009210.1.1	Tomato	nucleus	79.96	79.8
VIT_11s0016g00720.t01	Wine grape	extracellular, peroxisome, plastid	78.14	78.3
KRH19342	Soybean	endoplasmic reticulum	76.11	76.58
KRH02590	Soybean	extracellular, golgi, mitochondrion, plastid	75.91	76.22
KRH37525	Soybean	extracellular, plasma membrane	73.89	73.89
KRH12568	Soybean	plastid	73.08	73.82
GSMUA_Achr9P18190_001	Banana	mitochondrion	73.08	73.52
GSMUA_Achr5P22120_001	Banana	extracellular	73.08	73.37
GSMUA_Achr3P10280_001	Banana	mitochondrion	70.85	73.07
Os02t0781000-01	Rice	extracellular	39.68	68.77
AT1G19170.1	Thale cress	cytosol, extracellular, mitochondrion, peroxisome	70.04	68.38
Solyc03g117750.2.1	Tomato	extracellular, golgi	66.8	67.76
CDX83782	Canola	extracellular, golgi, plastid	69.23	67.46
CDX96676	Canola	extracellular, golgi, plastid	69.23	67.46
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	69.03	67.26
TraesCS6B01G371200.2	Wheat	mitochondrion	65.18	65.05
Zm00001d052103_P001	Maize	plasma membrane	64.78	64.65
TraesCS6A01G340000.1	Wheat	mitochondrion	64.37	64.24
TraesCS6D01G320600.1	Wheat	mitochondrion	64.37	64.24
EES05901	Sorghum	extracellular, golgi	64.98	64.2
GSMUA_Achr11P...	Banana	mitochondrion	63.56	63.95
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	64.37	63.73
Solyc08g082170.2.1	Tomato	nucleus	40.49	42.83
Solyc01g094970.2.1	Tomato	extracellular	34.82	42.26
Solyc08g081480.2.1	Tomato	extracellular	40.49	41.41
Solyc06g060170.2.1	Tomato	cytosol, golgi, plasma membrane	40.49	40.98
Solyc03g007950.2.1	Tomato	extracellular	38.46	40.69
Solyc06g009790.2.1	Tomato	extracellular	36.84	39.82
Solyc05g049980.2.1	Tomato	extracellular	38.06	38.68
Solyc09g075460.2.1	Tomato	extracellular	36.84	37.92
Solyc03g051770.2.1	Tomato	cytosol	12.96	20.32
Solyc06g030520.1.1	Tomato	cytosol	3.85	16.67

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:K4CE79
PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF21	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	EnsemblPlantsGene:Solyc07g042160.2	EnsemblPlants:Solyc07g042160.2.1	UniParc:UPI000276BE02	:

Description

No Description!

Coordinates

chr7:+:55150409..55163490

Molecular Weight (calculated)

55079.3 Da

IEP (calculated)

9.407

GRAVY (calculated)

-0.130

Length

494 amino acids

Sequence
(BLAST)

001: MVETLTPSSS SRWSQFHHPR PWITSLFSNP KTLLTILWIA VIFSVLFWQK DATTGILFFR RDFPVREMPK LRTVAFNLTE FGGVGDGVTL NTAAFERAVL
101: AISKLGKKGG GQLNVPPGYW LTAPFNLTSH MTLFLAEGAV ILGVDDQKYW PLMPPLPSYG YGREHIGPRY GSLIHGQNLR DVVITGHNGT INGQGQAWWK
201: KYKQRLLNNT RGPLVQIMWS SDIVISNITL RDSPFWTLHP YDCKNVTIKN VTILAPIFNA PNTDGIDPDS CEDMLIENCY ISVGDDGIAI KSGWDQYGIS
301: YGRPSKNIII RNLVVRSMVS AGISIGSEMS GGVSNVIVEN VHVWNSRRAV RIKTAAGRGG YVRHIAYRNL TFVNVRVGIV IKTDYNEHPA GEFNPKALPV
401: LEDISYTSIH GEGVRVPVRI HGNSEIPVKN LTIRDMSIGI TYKKKHIFQC SHVQGRVIGT VFPAPCENLD LYDEQGHLVR RSGSQNASDI DYDF

Best Arabidopsis Sequence Match ( AT3G42950.1 )
(BLAST)

001: MVRRFLSSHK SLITVFWIAT FASLFIWQFG GVSTNLYSGF SLFWSSSSTT TTVFSGGFPK LRPVVFNLTD FGAVGDGVTI NTEAFEKAIY KISKLAKKGG
101: GQLNVPPGRW LTAPFNLTSY MTLFLSENAE ILALQDEKYW SLLPPLPSYG YGREHHGPRY GSFIHGQNLR DVVVTGNNGS INGQGQTWWK KYRQKLLNHT
201: RGPLVQIMWS SDIVFANITL RDSPFWTLHP YDCKNVTITN MTILAPVFEA PNTDGIDPDS CEDMLIENSY ISVGDDGIAI KSGWDQYGTT YGKPSKNILI
301: RNLIIRSMVS AGISIGSEMS GGVSNITVEN ILIWSSRRGV RIKTAPGRGG YVRDITFRNV TLDELRVGIV IKTDYNEHPD GGFNPQAFPI LENINYTGIY
401: GQGVRVPVRI QGSKEIPVKN VTFRDMSVGI TYKKKHIFQC AYVEGRVIGT IFPAPCDNLD RYDEQERLVK QSDSQNATDI DYEI

Arabidopsis Description

AT3g42950/F18P9_110 [Source:UniProtKB/TrEMBL;Acc:Q9M1L0]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.