Factsheet for GSMUA_Achr5P22120_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
mitochondrion 2
extracellular 3
plasma membrane 2
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P18190_001	Banana	mitochondrion	87.4	87.58
GSMUA_Achr3P10280_001	Banana	mitochondrion	83.94	86.22
VIT_11s0016g00720.t01	Wine grape	extracellular, peroxisome, plastid	75.0	74.85
KRH19342	Soybean	endoplasmic reticulum	74.19	74.34
PGSC0003DMT400007594	Potato	extracellular	74.19	73.74
KRH02590	Soybean	extracellular, golgi, mitochondrion, plastid	73.58	73.58
Solyc12g009210.1.1	Tomato	nucleus	73.58	73.13
Solyc07g042160.2.1	Tomato	nucleus	73.37	73.08
AT1G19170.1	Thale cress	cytosol, extracellular, mitochondrion, peroxisome	73.98	71.94
KRH12568	Soybean	plastid	70.33	70.76
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	71.75	69.63
CDX96676	Canola	extracellular, golgi, plastid	71.75	69.63
CDX83782	Canola	extracellular, golgi, plastid	71.54	69.43
KRH37525	Soybean	extracellular, plasma membrane	69.51	69.23
AT3G42950.1	Thale cress	extracellular, golgi	67.68	68.8
PGSC0003DMT400036866	Potato	extracellular, golgi	67.48	68.17
CDY27797	Canola	extracellular, mitochondrion, plastid	69.31	68.06
Solyc03g117750.2.1	Tomato	extracellular, golgi	67.28	67.97
CDY41934	Canola	extracellular, mitochondrion, plastid	69.31	67.93
CDY53228	Canola	extracellular	15.45	67.86
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	69.11	67.73
GSMUA_Achr11P...	Banana	mitochondrion	67.07	67.21
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	66.87	65.93
KRH55874	Soybean	cytosol	8.13	60.61
GSMUA_Achr6P14280_001	Banana	cytosol	38.82	47.51
GSMUA_Achr8P19900_001	Banana	cytosol	40.04	47.47
GSMUA_Achr4P08470_001	Banana	extracellular	39.63	47.45
GSMUA_Achr10P...	Banana	cytosol	39.02	46.6
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	38.41	46.55
GSMUA_AchrUn_...	Banana	extracellular	36.59	45.8
GSMUA_Achr8P06180_001	Banana	extracellular	35.77	44.78
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	15.85	44.32
GSMUA_Achr4P05580_001	Banana	cytosol	26.42	41.67
GSMUA_Achr2P08050_001	Banana	cytosol, extracellular, golgi, mitochondrion	37.4	41.63
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	35.16	41.0
GSMUA_Achr11P...	Banana	extracellular	38.82	40.13
GSMUA_Achr11P...	Banana	cytosol	25.2	39.74
GSMUA_Achr11P...	Banana	cytosol	23.78	38.36
GSMUA_Achr11P...	Banana	extracellular, vacuole	32.52	35.96
GSMUA_Achr11P...	Banana	extracellular	34.96	31.33
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	11.59	28.36
GSMUA_Achr11P...	Banana	cytosol	34.76	25.83
GSMUA_Achr3P11090_001	Banana	extracellular	21.34	22.63

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	EnsemblPlantsGene:GSMUA_Achr5G22120_001	EnsemblPlants:GSMUA_Achr5P22120_001	EnsemblPlants:GSMUA_Achr5T22120_001
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0T0N7	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF21
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	TMHMM:TMhelix
UniParc:UPI000295E633	SEG:seg	:	:	:	:

Description

Putative Probable polygalacturonase [Source:GMGC_GENE;Acc:GSMUA_Achr5G22120_001]

Coordinates

chr5:-:24235351..24240319

Molecular Weight (calculated)

54365.5 Da

IEP (calculated)

8.718

GRAVY (calculated)

-0.058

Length

492 amino acids

Sequence
(BLAST)

001: MVEVSSSGWR STFHQHPRWL MGLLTMHRTL VLALWVVGFC LVFGWQVSSI DGITLFRRRV AVARPLPRLR PVAFNLTDFG GVGDGKTLNT AAFERAVEAI
101: SKLGSRGGGQ LNVPAGLWLT APFNLTSHMT LFLAEDAVIL GIEDESYWPL MPPLPSYGYG REHKGPRYGS LIHGQNLKDI VITGHNGTIN GQGQAWWTKY
201: KKRILTYTRG PLVQLMWSKD IVISNITLRD SPFWTLHPFD CKNVTISKVT ILAPIFGAPN TDGIDPDSCE DVLIENSYIC VGDDAVAIKS GWDQYGIAYG
301: RPSTNITLRN LTVRSVVSAG VSIGSEMSGG VSNVTVDNLI VWESRRGIRI KTAPGRGGYI RNITYRNVTL DNVRVGIMIK TDYNEHPDEG FDPKAMPIIA
401: NISFSGIHGQ GVRVPVRIHG SEDIPVKGVS FQDMSVGLTY KKKHIFQCSF IKGRVIGLIF PSPCENLDLY DEQGNLVKQS ASQNITDIDY DI

Best Arabidopsis Sequence Match ( AT1G19170.1 )
(BLAST)

001: MVENLFPSRF QFHLQRLDPK RRLTSLLASH KTLFTFLWIT AFGSVFLWQR TAYIEGGSGT GPVGGKFTIF GKIKPIQPIP RLRPVVFDLK DFGGVGDGFT
101: LNTEAFERAV ISISKLGGSS GGGQLNVPPG RWLTAPFNLT SHMTLFLAED SEILGVEDEK YWPLMPPLPS YGYGRERPGP RYGSLIHGQN LKDIVITGHN
201: GTINGQGQSW WKKHQRRLLN YTRGPLVQIM WSSDIVIANI TMRDSPFWTL HPYDCKNVTI RNVTILAPVT GAPNTDGIDP DSCEDMVIED CYISTGDDAI
301: AIKSGWDQFG IAYGRPSTNI LIRNLVVRSV ISAGVSIGSE MSGGISNVTI ENLLIWNSRR GIRIKTAPGR GGYIRNITYK NLTLDNVRVG IVIKTDYNEH
401: ADDNYDRKAY PILSGFSFAG IHGQGVRVPV RIHGSEQIPV RNVTFRDMSV GLTYKKKHIF QCSFVKGRVF GSIFPRPCEN FDVYDEEGRL VKPAAESNVA
501: DIDYDI

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IE17]
SUBAcon: [mitochondrion,peroxisome,extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.