Factsheet for GSMUA_Achr4P15650_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P08470_001	Banana	extracellular	75.62	74.7
Os01t0618900-01	Rice	cytosol, extracellular	52.46	64.74
GSMUA_Achr6P14280_001	Banana	cytosol	62.32	62.94
Os05t0587000-01	Rice	extracellular	68.72	62.28
GSMUA_Achr10P...	Banana	cytosol	63.05	62.14
GSMUA_Achr8P19900_001	Banana	cytosol	63.05	61.69
TraesCS3B01G253000.1	Wheat	extracellular	67.73	61.11
EES01085	Sorghum	extracellular	66.26	60.18
EES20030	Sorghum	extracellular	65.02	60.14
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	25.86	59.66
TraesCS3D01G230000.1	Wheat	extracellular	66.01	59.56
VIT_02s0025g01330.t01	Wine grape	extracellular	65.02	59.06
CDY47619	Canola	extracellular, vacuole	64.53	59.01
Bra013734.1-P	Field mustard	extracellular, vacuole	64.29	58.78
CDY03516	Canola	extracellular, vacuole	64.04	58.56
Zm00001d009717_P001	Maize	extracellular	64.29	58.52
Zm00001d011369_P001	Maize	extracellular	63.79	58.2
AT4G23820.1	Thale cress	extracellular, vacuole	63.55	58.11
PGSC0003DMT400031687	Potato	extracellular	63.3	57.49
KRG99037	Soybean	nucleus	62.32	57.24
KRH14547	Soybean	extracellular	62.81	57.17
KRH45957	Soybean	extracellular	61.82	56.66
AT5G41870.1	Thale cress	extracellular	62.07	56.12
CDX94222	Canola	extracellular	62.07	55.88
CDY10970	Canola	extracellular, vacuole	62.07	55.88
Bra028511.1-P	Field mustard	extracellular	61.33	55.7
CDX67513	Canola	extracellular	61.33	55.7
Bra019264.1-P	Field mustard	extracellular, vacuole	61.82	55.65
Solyc08g082170.2.1	Tomato	nucleus	63.55	55.25
CDY13383	Canola	extracellular	60.34	55.06
KRH73576	Soybean	extracellular	36.7	53.99
GSMUA_Achr8P06180_001	Banana	extracellular	48.77	50.38
HORVU3Hr1G054810.4	Barley	extracellular	65.52	49.17
GSMUA_AchrUn_...	Banana	extracellular	46.31	47.84
GSMUA_Achr4P05580_001	Banana	cytosol	36.7	47.76
GSMUA_Achr2P08050_001	Banana	cytosol, extracellular, golgi, mitochondrion	50.74	46.61
GSMUA_Achr11P...	Banana	cytosol	34.98	45.51
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	46.8	45.02
GSMUA_Achr11P...	Banana	cytosol	33.74	44.92
GSMUA_Achr11P...	Banana	extracellular	46.31	39.5
GSMUA_Achr11P...	Banana	extracellular, vacuole	43.1	39.33
GSMUA_Achr5P22120_001	Banana	extracellular	46.55	38.41
GSMUA_Achr3P10280_001	Banana	mitochondrion	45.32	38.41
GSMUA_Achr11P...	Banana	mitochondrion	46.06	38.09
GSMUA_Achr9P18190_001	Banana	mitochondrion	45.57	37.68
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	44.34	36.07
GSMUA_Achr11P...	Banana	extracellular	48.52	35.88
GSMUA_Achr11P...	Banana	cytosol	44.83	27.49
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	12.81	25.87
GSMUA_Achr3P11090_001	Banana	extracellular	22.66	19.83

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	EnsemblPlantsGene:GSMUA_Achr4G15650_001	EnsemblPlants:GSMUA_Achr4P15650_001
EnsemblPlants:GSMUA_Achr4T15650_001	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0SP80	PFAM:PF00295	PANTHER:PTHR31339
PANTHER:PTHR31339:SF3	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI00029509B9	SEG:seg	:	:	:	:

Description

Putative Probable polygalacturonase [Source:GMGC_GENE;Acc:GSMUA_Achr4G15650_001]

Coordinates

chr4:-:11949923..11953200

Molecular Weight (calculated)

43577.1 Da

IEP (calculated)

6.035

GRAVY (calculated)

0.012

Length

406 amino acids

Sequence
(BLAST)

001: MVRWLLVVPA LVAVLLAVLK GGAFVVAEGE ATCSGIVPMK SREKMVSIAD FGGVGDGKTL NTAAFESAIS HIVQQNAPGG THLHIPAGVW LTGAFNLTSH
101: MTLFLAKDAV IKATQDTSNW PLIDPLPSYG RGRELPGGRY MSLIHGNGLR DVIITGENGT IDGQGDMWWN MWRQKTLRFT RPNLLELMHS TDVIISNVVF
201: QDSPFWNIHP VYCSNVVVKN VTILAPYDSP NTDGVDPDSS MNVCIEDCYI STGDDLVAVK SGWDEYGIAY ARPSSGITTN SGRGGFIRNI TISDVNLNNV
301: RKALKISGKA GDHPDDGYDP NALPVVDGLT IKNVWGVGVR QPGSIQGIKD SPFTHICLSN VTLKVNSSRE VPWTCADVSG GALEVQPSPC AELTSVNGVR
401: FCTNAL

Best Arabidopsis Sequence Match ( AT4G23820.1 )
(BLAST)

001: MWRLSVSIFL FSCLFVSSSS LGDSEATCSG IVPLRYRYDK ISITDFGGVG DGRTVNTKAF RAAIYRIQHL KRRGGTLLYI PPGVYLTESF NLTSHMTLYL
101: AKGAVIRAVQ DTWNWPLIDP LPSYGRGREL PGGRYMSFIH GDGLRDVVIT GQNGTIDGQG EVWWNMWRSR TLKYTRPNLI EFKDSKEIII SNVIFQNSPF
201: WNIHPVYCSN VVIHHVTILA PQDSPNTDGI DPDSSYNVCI EDSYISTGDD LVAIKSGWDQ YGIAYGRPSS NITIRRITGS SPFAGIAIGS ETSGGIKNII
301: AEHITLSNMG VGVNIKTNIG RGGYIKNIKI SDVYVDTAKY GIKIAGDTGD HPDENYNPNA LPVVKGIHIK NVWGVNVRNA GSIQGLKGSP FTGICLSEIN
401: LHGSLNSYKT WKCSDVSGTS LKVSPWPCSE LRTTGGSNLC SSTF

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SUP5]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.