Factsheet for HORVU3Hr1G054810.4

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	extracellular, plastid
iPSORT:	plastid
MultiLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G253000.1	Wheat	extracellular	77.26	92.89
TraesCS3D01G230000.1	Wheat	extracellular	76.53	92.0
Os01t0618900-01	Rice	cytosol, extracellular	53.42	87.84
EES01085	Sorghum	extracellular	69.13	83.67
Zm00001d011369_P001	Maize	extracellular	64.51	78.43
GSMUA_Achr4P08470_001	Banana	extracellular	54.71	72.02
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	49.17	65.52
PGSC0003DMT400031687	Potato	extracellular	52.13	63.09
KRH73576	Soybean	extracellular	31.79	62.32
KRG99037	Soybean	nucleus	50.83	62.22
VIT_02s0025g01330.t01	Wine grape	extracellular	51.39	62.19
AT4G23820.1	Thale cress	extracellular, vacuole	50.83	61.94
KRH45957	Soybean	extracellular	50.65	61.85
CDY47619	Canola	extracellular, vacuole	50.46	61.49
KRH14547	Soybean	extracellular	50.65	61.44
Bra013734.1-P	Field mustard	extracellular, vacuole	50.28	61.26
CDY03516	Canola	extracellular, vacuole	50.09	61.04
CDY10970	Canola	extracellular, vacuole	50.65	60.75
Bra019264.1-P	Field mustard	extracellular, vacuole	50.46	60.53
CDX94222	Canola	extracellular	50.46	60.53
Solyc08g082170.2.1	Tomato	nucleus	51.94	60.17
CDX67513	Canola	extracellular	47.5	57.49
Bra028511.1-P	Field mustard	extracellular	47.5	57.49
CDY13383	Canola	extracellular	47.13	57.3
AT5G41870.1	Thale cress	extracellular	47.32	57.02
HORVU5Hr1G117470.3	Barley	extracellular	39.19	44.54
HORVU5Hr1G062220.2	Barley	extracellular	38.08	38.79
HORVU5Hr1G023800.7	Barley	plastid	34.75	36.65
HORVU7Hr1G077560.12	Barley	plastid	31.24	34.99
HORVU5Hr1G073070.1	Barley	extracellular, plasma membrane, vacuole	19.41	22.63
HORVU3Hr1G088950.1	Barley	extracellular	18.3	21.81

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	UniProt:A0A287L3T8	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28
EnsemblPlantsGene:HORVU3Hr1G054810	EnsemblPlants:HORVU3Hr1G054810.4	InterPro:IPR012334	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF16
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	UniParc:UPI000B4874BE
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:-:408772467..408776187

Molecular Weight (calculated)

45455.9 Da

IEP (calculated)

7.261

GRAVY (calculated)

-0.057

Length

541 amino acids

Sequence
(BLAST)

001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
101: XXXXXXXXXX XXXSAAGGAG AQETCSGAAP APPKRGAWMS IASFGGAGDG RTLNTAAFAA AVASIARRRA RGGALLYVPP GVWLTGPFSL TSHMTLFLAR
201: GAVIRATQDT SSWPLIDPLP SYGRGRELPG KRYISLIHGN GLQDVFITGE NGTIDGQGSV WWDMWKKGTL PFTRPHLLEL MDSSNAIVSN LVFQDSPFWN
301: IHPVYCSNVV IRNLTILAPH DSPNTDGIDP DSSSNVCIED CYISTGDDLI AIKSGWDEYG IAYGRPSSDI TIRRITGSSP FAGFSVGSET SGGVENVLAE
401: HLNFYSSGFG VHIKTNSGRG GFIRNITVSD VILDNVRYGL RIAGDVGGHP DERYNHNALP IVDSLMIKNV QGQNIKEAGL IKGIPNSAFS RICLSNIKLH
501: GSAPVRPWKC QAVSGGALDV QPSPCTELTS MSGMSFCTNS L

Best Arabidopsis Sequence Match ( AT4G23820.1 )
(BLAST)

001: MWRLSVSIFL FSCLFVSSSS LGDSEATCSG IVPLRYRYDK ISITDFGGVG DGRTVNTKAF RAAIYRIQHL KRRGGTLLYI PPGVYLTESF NLTSHMTLYL
101: AKGAVIRAVQ DTWNWPLIDP LPSYGRGREL PGGRYMSFIH GDGLRDVVIT GQNGTIDGQG EVWWNMWRSR TLKYTRPNLI EFKDSKEIII SNVIFQNSPF
201: WNIHPVYCSN VVIHHVTILA PQDSPNTDGI DPDSSYNVCI EDSYISTGDD LVAIKSGWDQ YGIAYGRPSS NITIRRITGS SPFAGIAIGS ETSGGIKNII
301: AEHITLSNMG VGVNIKTNIG RGGYIKNIKI SDVYVDTAKY GIKIAGDTGD HPDENYNPNA LPVVKGIHIK NVWGVNVRNA GSIQGLKGSP FTGICLSEIN
401: LHGSLNSYKT WKCSDVSGTS LKVSPWPCSE LRTTGGSNLC SSTF

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SUP5]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.