Factsheet for HORVU3Hr1G088950.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G387300.1	Wheat	unclear	93.39	93.39
TraesCS3A01G393600.1	Wheat	extracellular	92.73	92.73
HORVU5Hr1G073070.1	Barley	extracellular, plasma membrane, vacuole	87.89	85.99
Os09t0487600-01	Rice	extracellular	83.7	83.15
EER99085	Sorghum	extracellular, plasma membrane	82.6	81.17
Zm00001d020931_P001	Maize	extracellular	81.28	79.35
GSMUA_Achr3P11090_001	Banana	extracellular	68.72	67.24
Solyc03g051770.2.1	Tomato	cytosol	44.05	63.49
KRG95330	Soybean	extracellular, plasma membrane, vacuole	61.01	59.44
VIT_08s0007g07880.t01	Wine grape	extracellular, plasma membrane	60.79	57.38
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	59.91	56.9
CDY02392	Canola	extracellular, plasma membrane, vacuole	59.91	56.9
CDY12962	Canola	extracellular, plasma membrane, vacuole	59.69	56.69
AT3G57790.1	Thale cress	extracellular, plasma membrane, vacuole	59.47	55.1
PGSC0003DMT400033674	Potato	extracellular, plasma membrane	57.71	55.04
HORVU5Hr1G117470.3	Barley	extracellular	22.47	21.43
HORVU5Hr1G062220.2	Barley	extracellular	24.01	20.53
HORVU5Hr1G023800.7	Barley	plastid	21.37	18.91
HORVU3Hr1G054810.4	Barley	extracellular	21.81	18.3
HORVU7Hr1G077560.12	Barley	plastid	18.72	17.6

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	EnsemblPlantsGene:HORVU3Hr1G088950	EnsemblPlants:HORVU3Hr1G088950.1
InterPro:IPR012334	UniProt:M0YJQ9	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF10	InterPro:PbH1
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0002952A35
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:626603244..626605033

Molecular Weight (calculated)

49571.7 Da

IEP (calculated)

7.496

GRAVY (calculated)

-0.203

Length

454 amino acids

Sequence
(BLAST)

001: MAASHLVLLL LLLAPVADCA PTRVFSVADY GAAGDGSRYD TAAIQAAVNE CGKAGSGRVL LPGPGDYLTA TVHLRSRVVL EVAPGARLLG GTRQRDYPAE
101: RSRWYVVLAE NTTGAGVTGG GEVNGQGGAF VITPSDQKNV MVSWNATGHC QGDECRPRLV GFVDSKDVTI DDVTLNQPAY WCLHLVRCDH SVIRNVSIYG
201: DFDTPNNDGI DIEGSNNTII TDCSIDTGDD AICPKSLTGP VYNLTVTNSR IRTKSSAIKF GSASSFNFEG LLFDNITIVD SHRGLGMQIR DGGNVSNVIF
301: SNIKMRTRYY HPSWWGRAEP IYITTCPRYP GSREGTISDV SFVNISSVSE NGVFLAGSRH GLLRNLKFKN VDLTYKRWTN YTGGLYDYRP GCQAMVKHKT
401: GGMMLEHISG LEIDNVRMRW SRGSLKGWDV NPLLFRPSTI DGLSFHDWQS LNVQ

Best Arabidopsis Sequence Match ( AT3G57790.2 )
(BLAST)

001: MMGSILLLLL FFSLVQSRSD TSYSKIQLPG DSLTLSVTDF GATGDGINYD TSAIQSTIDA CNRHYTSFSS ICRVVFPSGN YLTAKLHLRS GVILDVTENA
101: VLLGGPRIED YYPAETSSDW YVVVANNATD VGITGGGAID GQGSKFVVRF DEKKNVMVSW NQTGACLGDE CRPRLVGFVD SINVEIWNIT LREPAYWCLH
201: IVRCENTSVH DVSILGDFNT PNNDGIDIED SNNTVITRCH IDTGDDAICP KTYTGPLYNL TATDCWIRTK SSAIKLGSAS WFDFKGLVFD NITIFESHRG
301: LGMQIRDGGN VSDVTFSNIN ISTRYYDPSW WGRAEPIYIT TCPRDSSAKE GSISNLLFVN ITIDSENGVF LSGSPNGLLS DIKFKNMNLT FRRWSNYSAG
401: LVDYRPGCQG LVNHRATSGI IMEHVNGFRV ENVDLKWSDD DDVNAAWNVP LEFRPSTVNN VSFVGFTSGL YTKLFESDYV MVGENNIAFA

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J3I0]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.