Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02392 | Canola | extracellular, plasma membrane, vacuole | 98.74 | 98.74 |
| AT3G57790.1 | Thale cress | extracellular, plasma membrane, vacuole | 87.24 | 85.1 |
| Solyc03g051770.2.1 | Tomato | cytosol | 44.77 | 67.94 |
| KRG95330 | Soybean | extracellular, plasma membrane, vacuole | 65.48 | 67.17 |
| VIT_08s0007g07880.t01 | Wine grape | extracellular, plasma membrane | 63.6 | 63.2 |
| Os09t0487600-01 | Rice | extracellular | 58.16 | 60.83 |
| EER99085 | Sorghum | extracellular, plasma membrane | 58.37 | 60.39 |
| TraesCS3D01G387300.1 | Wheat | unclear | 57.11 | 60.13 |
| TraesCS3A01G393600.1 | Wheat | extracellular | 57.11 | 60.13 |
| PGSC0003DMT400033674 | Potato | extracellular, plasma membrane | 59.83 | 60.08 |
| TraesCS5D01G271900.1 | Wheat | extracellular, plasma membrane, vacuole | 57.11 | 59.74 |
| HORVU3Hr1G088950.1 | Barley | extracellular | 56.69 | 59.69 |
| Zm00001d020931_P001 | Maize | extracellular | 57.95 | 59.57 |
| GSMUA_Achr3P11090_001 | Banana | extracellular | 57.53 | 59.27 |
| TraesCS5A01G264400.2 | Wheat | unclear | 56.49 | 59.08 |
| TraesCS5B01G263700.2 | Wheat | extracellular, plasma membrane | 55.44 | 57.36 |
| HORVU5Hr1G073070.1 | Barley | extracellular, plasma membrane, vacuole | 55.65 | 57.33 |
| CDY53228 | Canola | extracellular | 7.53 | 32.14 |
| CDY69951 | Canola | cytosol | 7.32 | 27.78 |
| CDX67513 | Canola | extracellular | 22.8 | 24.38 |
| CDY70893 | Canola | cytosol | 18.2 | 24.3 |
| CDY13383 | Canola | extracellular | 22.59 | 24.27 |
| CDY03516 | Canola | extracellular, vacuole | 22.18 | 23.87 |
| CDY47619 | Canola | extracellular, vacuole | 22.18 | 23.87 |
| CDX94222 | Canola | extracellular | 22.38 | 23.73 |
| CDY10970 | Canola | extracellular, vacuole | 22.38 | 23.73 |
| CDY20264 | Canola | extracellular | 23.64 | 23.64 |
| CDY39678 | Canola | extracellular | 23.43 | 23.43 |
| CDY69255 | Canola | cytosol | 18.41 | 23.4 |
| CDY65355 | Canola | extracellular | 23.01 | 23.31 |
| CDY05885 | Canola | extracellular | 22.59 | 23.28 |
| CDY11403 | Canola | extracellular, plasma membrane | 22.38 | 23.26 |
| CDY48913 | Canola | extracellular | 22.8 | 23.14 |
| CDX67875 | Canola | extracellular, golgi | 21.97 | 22.93 |
| CDY05907 | Canola | cytosol | 20.92 | 22.83 |
| CDX76617 | Canola | extracellular, plasma membrane | 21.97 | 22.83 |
| CDX75352 | Canola | extracellular | 22.38 | 22.67 |
| CDY54633 | Canola | extracellular | 21.13 | 22.54 |
| CDX68976 | Canola | extracellular | 22.18 | 22.51 |
| CDY25090 | Canola | extracellular, golgi | 21.55 | 22.49 |
| CDY08113 | Canola | extracellular | 21.34 | 22.37 |
| CDY44105 | Canola | cytosol, nucleus, plasma membrane | 21.13 | 22.35 |
| CDX82390 | Canola | extracellular | 20.92 | 22.27 |
| CDY46115 | Canola | extracellular | 21.97 | 22.2 |
| CDX72404 | Canola | extracellular | 21.97 | 22.2 |
| CDY27797 | Canola | extracellular, mitochondrion, plastid | 23.01 | 21.96 |
| CDY41934 | Canola | extracellular, mitochondrion, plastid | 23.01 | 21.91 |
| CDY08095 | Canola | extracellular, plasma membrane | 22.59 | 21.82 |
| CDX92101 | Canola | extracellular, golgi | 20.71 | 21.76 |
| CDX74085 | Canola | cytoskeleton, cytosol, vacuole | 17.15 | 21.58 |
| CDY08036 | Canola | cytosol, nucleus, vacuole | 16.95 | 21.49 |
| CDY33922 | Canola | extracellular | 19.87 | 21.4 |
| CDX71719 | Canola | mitochondrion | 7.32 | 21.34 |
| CDX95899 | Canola | extracellular | 20.08 | 21.19 |
| CDX83782 | Canola | extracellular, golgi, plastid | 22.38 | 21.1 |
| CDX96676 | Canola | extracellular, golgi, plastid | 22.38 | 21.1 |
| CDY56436 | Canola | extracellular, vacuole | 20.5 | 20.68 |
| CDY05643 | Canola | extracellular, plasma membrane, plastid | 20.29 | 20.29 |
| CDX86247 | Canola | plasma membrane, plastid | 20.5 | 19.56 |
| CDY10897 | Canola | cytosol, extracellular, peroxisome | 9.41 | 18.83 |
| CDY10899 | Canola | cytosol | 3.77 | 18.75 |
| CDY10898 | Canola | cytosol | 1.67 | 15.69 |
| CDY11375 | Canola | mitochondrion | 11.51 | 10.85 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | GO:A0A078FJ22 | UniProt:A0A078FJ22 | EnsemblPlants:CDY12962 | ProteinID:CDY12962 |
| ProteinID:CDY12962.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005975 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016787 | GO:GO:0016798 | EnsemblPlantsGene:GSBRNA2T00070677001 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 |
| PFAM:PF00295 | PANTHER:PTHR31339 | PANTHER:PTHR31339:SF10 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SUPFAM:SSF51126 |
| SignalP:SignalP-noTM | UniParc:UPI0004EC3650 | SEG:seg | : | : | : |
Description
BnaC02g29690DBnaC02g29690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJ22]
Coordinates
chrLK032029:-:267558..269245
Molecular Weight (calculated)
52785.3 Da
IEP (calculated)
5.106
GRAVY (calculated)
-0.090
Length
478 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFPLLLRSI LFPLCLLFSV IQSRPYTSSQ KIQLPGDSLA LSVADFGATG DGIHYDTSEI QSAINACNHH YTSSSSICRV KFPPGTYLTA KLHLRSGVLL
101: DVTENAVLLG GPRIEDYPAE TSSDWYVVVA NNATDVGITG GGAIDGQGSK FVVRFDERKN VMVSWNQTGA CLGDECRPRL VGFVDSTNVQ IWNITLRDPA
201: YWCLHIVRCE NTSVHDVSIL GDFNTPNNDG IDIEDSNNTF ITRCHIDTGD DAICPKTYVA PLYNLTVTDC WIRTKSSAIK LGSASWFEFK SLVFDNITIF
301: ESHRGLGMQI RDGGNVNGIT FSNMNISTRY YDPSWWGRAE PIYITTCPRD SSSKEGSISN LLFVNITIVS ENGVFLSGSP NGLLTDIKFK NMNITLRRWS
401: NYTSGLVDYR PGCQGLMNHS ATAGIIMEHV NGFSVENVDL KWSDDNLNAW NVPLEFRPST VNNVSFVGFS SGLLHEIV
101: DVTENAVLLG GPRIEDYPAE TSSDWYVVVA NNATDVGITG GGAIDGQGSK FVVRFDERKN VMVSWNQTGA CLGDECRPRL VGFVDSTNVQ IWNITLRDPA
201: YWCLHIVRCE NTSVHDVSIL GDFNTPNNDG IDIEDSNNTF ITRCHIDTGD DAICPKTYVA PLYNLTVTDC WIRTKSSAIK LGSASWFEFK SLVFDNITIF
301: ESHRGLGMQI RDGGNVNGIT FSNMNISTRY YDPSWWGRAE PIYITTCPRD SSSKEGSISN LLFVNITIVS ENGVFLSGSP NGLLTDIKFK NMNITLRRWS
401: NYTSGLVDYR PGCQGLMNHS ATAGIIMEHV NGFSVENVDL KWSDDNLNAW NVPLEFRPST VNNVSFVGFS SGLLHEIV
001: MMGSILLLLL FFSLVQSRSD TSYSKIQLPG DSLTLSVTDF GATGDGINYD TSAIQSTIDA CNRHYTSFSS ICRVVFPSGN YLTAKLHLRS GVILDVTENA
101: VLLGGPRIED YYPAETSSDW YVVVANNATD VGITGGGAID GQGSKFVVRF DEKKNVMVSW NQTGACLGDE CRPRLVGFVD SINVEIWNIT LREPAYWCLH
201: IVRCENTSVH DVSILGDFNT PNNDGIDIED SNNTVITRCH IDTGDDAICP KTYTGPLYNL TATDCWIRTK SSAIKLGSAS WFDFKGLVFD NITIFESHRG
301: LGMQIRDGGN VSDVTFSNIN ISTRYYDPSW WGRAEPIYIT TCPRDSSAKE GSISNLLFVN ITIDSENGVF LSGSPNGLLS DIKFKNMNLT FRRWSNYSAG
401: LVDYRPGCQG LVNHRATSGI IMEHVNGFRV ENVDLKWSDD DDVNAAWNVP LEFRPSTVNN VSFVGFTSGL YTKLFESDYV MVGENNIAFA
101: VLLGGPRIED YYPAETSSDW YVVVANNATD VGITGGGAID GQGSKFVVRF DEKKNVMVSW NQTGACLGDE CRPRLVGFVD SINVEIWNIT LREPAYWCLH
201: IVRCENTSVH DVSILGDFNT PNNDGIDIED SNNTVITRCH IDTGDDAICP KTYTGPLYNL TATDCWIRTK SSAIKLGSAS WFDFKGLVFD NITIFESHRG
301: LGMQIRDGGN VSDVTFSNIN ISTRYYDPSW WGRAEPIYIT TCPRDSSAKE GSISNLLFVN ITIDSENGVF LSGSPNGLLS DIKFKNMNLT FRRWSNYSAG
401: LVDYRPGCQG LVNHRATSGI IMEHVNGFRV ENVDLKWSDD DDVNAAWNVP LEFRPSTVNN VSFVGFTSGL YTKLFESDYV MVGENNIAFA
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J3I0]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.