CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 1
mitochondrion 1
extracellular 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71719	Canola	mitochondrion	27.62	40.24
CDY44105	Canola	cytosol, nucleus, plasma membrane	58.58	30.97
CDY53228	Canola	extracellular	12.97	27.68
CDY70893	Canola	cytosol	40.17	26.82
CDY69255	Canola	cytosol	41.0	26.06
CDY65355	Canola	extracellular	46.03	23.31
CDY48913	Canola	extracellular	45.61	23.14
CDY47619	Canola	extracellular, vacuole	41.42	22.3
CDY03516	Canola	extracellular, vacuole	41.42	22.3
CDY69951	Canola	cytosol	11.72	22.22
CDX94222	Canola	extracellular	41.42	21.95
CDX74085	Canola	cytoskeleton, cytosol, vacuole	34.73	21.84
CDY08036	Canola	cytosol, nucleus, vacuole	34.31	21.75
CDY10970	Canola	extracellular, vacuole	40.59	21.51
CDY33922	Canola	extracellular	39.75	21.4
CDY05885	Canola	extracellular	41.0	21.12
CDX67875	Canola	extracellular, golgi	40.17	20.96
CDX92101	Canola	extracellular, golgi	39.75	20.88
CDY54633	Canola	extracellular	38.91	20.76
CDX95899	Canola	extracellular	39.33	20.75
CDY25090	Canola	extracellular, golgi	39.75	20.74
CDY13383	Canola	extracellular	38.49	20.67
CDY46115	Canola	extracellular	40.59	20.51
CDX82390	Canola	extracellular	38.49	20.49
CDY11403	Canola	extracellular, plasma membrane	39.33	20.43
CDX72404	Canola	extracellular	40.17	20.3
CDY08095	Canola	extracellular, plasma membrane	41.84	20.2
CDX68976	Canola	extracellular	39.75	20.17
CDX67513	Canola	extracellular	37.66	20.13
CDX75352	Canola	extracellular	39.75	20.13
CDY05643	Canola	extracellular, plasma membrane, plastid	39.75	19.87
CDY56436	Canola	extracellular, vacuole	39.33	19.83
CDX76617	Canola	extracellular, plasma membrane	38.08	19.78
CDY20264	Canola	extracellular	38.91	19.46
CDY39678	Canola	extracellular	38.91	19.46
CDY05907	Canola	cytosol	35.56	19.41
CDY08113	Canola	extracellular	35.56	18.64
CDX86247	Canola	plasma membrane, plastid	38.49	18.36
CDY11375	Canola	mitochondrion	38.91	18.34
CDX83782	Canola	extracellular, golgi, plastid	35.98	16.96
CDX96676	Canola	extracellular, golgi, plastid	35.56	16.77
CDY27797	Canola	extracellular, mitochondrion, plastid	34.31	16.37
CDY41934	Canola	extracellular, mitochondrion, plastid	34.31	16.33
CDY12962	Canola	extracellular, plasma membrane, vacuole	18.83	9.41
CDY02392	Canola	extracellular, plasma membrane, vacuole	18.41	9.21
CDY10898	Canola	cytosol	0.42	1.96
CDY10899	Canola	cytosol	0.42	1.04

Protein Annotations

Gene3D:2.160.20.10	MapMan:35.1	GO:A0A078FD46	UniProt:A0A078FD46	EnsemblPlants:CDY10897	ProteinID:CDY10897
ProteinID:CDY10897.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	EnsemblPlantsGene:GSBRNA2T00048801001	InterPro:Glyco_hydro_28	InterPro:IPR012334
PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF7	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126
UniParc:UPI0004EEEE90	SEG:seg	:	:	:	:

Description

BnaC01g15120DBnaC01g15120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FD46]

Coordinates

chrLK032007:+:751902..755623

Molecular Weight (calculated)

26390.7 Da

IEP (calculated)

6.010

GRAVY (calculated)

-0.008

Length

239 amino acids

Sequence
(BLAST)

001: MPNIPSEPPM PNIPSEPPIY ILIAIVATMA TVAEKSLSTQ PYRVELIQLS QLSRFADYGG SLLFVPAGRW LTGSFNLTSH FTLFLHRDAV LLASQEESDY
101: EVIEPLPSYG RGRETDGGRR FISLRFGSNL TDVVITSENG TIDGQGEPWW GKFKGGELKY TRPYLIEIMH SDGIQISNLT FLNSPSWHIH PVYSSNIVIQ
201: GLTILAPVTV PNTTGSTLIL ARTRGSKTAT LCPETIVWL

Best Arabidopsis Sequence Match ( AT3G61490.1 )
(BLAST)

001: MKNILACIVT IITLSNLITI SQGRRVSQSF ETFEYTAIIC RSHSASITEY GGVGDGKTLN TKAFQSAVDH LSQYSSEGGA QLFVPAGKWL TGSFNLTSHF
101: TLFLHKDAIL LAAQDLNEYP ILKALPSYGR GRDAAGGRFA SLIFGTNLSD VIITGNNGTI DGQGSFWWQK FHGGKLKYTR PYLIELMFSD TIQISNLTFL
201: DSPSWNIHPV YSSNIIVKGV TIIAPVKSPN TDGINPDSCT NTRIEDCYII SGDDCIAVKS GWDEYGISFG MPTKHLVIRR LTCISPYSAA IALGSEMSGG
301: IEDVRAEDIT AYQTESGVRI KTAVGRGAFV KNIYVKGMNL HTMKWVFWMT GNYKAHADSH YDPHALPEIT GINYRDIVAE NVSMAGRLEG ISGDPFTGIC
401: ISNATISMAA KHKKAIWMCS DVEGVTSGVD PKPCDLLDGQ ESETTKKKMI DGGCDFPTDV LEIDNVELKT CSYQMS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS88]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.