CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018004.1-P	Field mustard	cytosol	94.96	99.08
CDY05907	Canola	cytosol	94.52	98.4
CDY10898	Canola	cytosol	7.89	70.59
CDY39678	Canola	extracellular	73.25	69.87
CDY20264	Canola	extracellular	73.25	69.87
CDY05885	Canola	extracellular	70.61	69.4
CDY08095	Canola	extracellular, plasma membrane	71.71	66.06
CDY69951	Canola	cytosol	17.54	63.49
KRG91587	Soybean	cytosol, extracellular, plastid	33.77	63.11
KRH35240	Soybean	extracellular	63.6	61.57
CDY70893	Canola	cytosol	47.81	60.89
KRH35239	Soybean	extracellular, plasma membrane, plastid	63.82	60.62
KRH35238	Soybean	extracellular	60.96	59.66
CDY69255	Canola	cytosol	48.46	58.78
KRH38380	Soybean	extracellular	60.53	57.98
KRH08861	Soybean	extracellular	60.53	57.86
CDY65355	Canola	extracellular	56.8	54.87
CDY44105	Canola	cytosol, nucleus, plasma membrane	54.17	54.65
Solyc03g007950.2.1	Tomato	extracellular	55.7	54.39
CDY10899	Canola	cytosol	11.4	54.17
CDY48913	Canola	extracellular	55.7	53.93
PGSC0003DMT400024595	Potato	cytosol	55.04	52.62
VIT_16s0050g01120.t01	Wine grape	cytosol	21.49	52.41
CDY53228	Canola	extracellular	10.75	43.75
CDY03516	Canola	extracellular, vacuole	41.23	42.34
CDY47619	Canola	extracellular, vacuole	41.23	42.34
CDX94222	Canola	extracellular	41.67	42.13
CDY11403	Canola	extracellular, plasma membrane	42.32	41.96
CDY10970	Canola	extracellular, vacuole	41.45	41.91
CDX67875	Canola	extracellular, golgi	41.45	41.27
CDX76617	Canola	extracellular, plasma membrane	41.45	41.09
CDY25090	Canola	extracellular, golgi	41.23	41.05
CDY46115	Canola	extracellular	41.89	40.38
CDY13383	Canola	extracellular	39.25	40.22
CDX82390	Canola	extracellular	39.47	40.09
CDX67513	Canola	extracellular	39.25	40.04
CDY54633	Canola	extracellular	39.25	39.96
CDX75352	Canola	extracellular	41.23	39.83
CDX72404	Canola	extracellular	41.23	39.75
CDX68976	Canola	extracellular	41.01	39.7
CDY33922	Canola	extracellular	38.38	39.41
CDX92101	Canola	extracellular, golgi	39.25	39.34
CDX95899	Canola	extracellular	38.82	39.07
CDY08036	Canola	cytosol, nucleus, vacuole	31.14	37.67
CDX74085	Canola	cytoskeleton, cytosol, vacuole	31.14	37.37
CDY56436	Canola	extracellular, vacuole	38.6	37.13
CDY05643	Canola	extracellular, plasma membrane, plastid	38.6	36.82
CDY27797	Canola	extracellular, mitochondrion, plastid	40.13	36.53
CDY41934	Canola	extracellular, mitochondrion, plastid	40.13	36.45
CDY10897	Canola	cytosol, extracellular, peroxisome	18.64	35.56
CDX86247	Canola	plasma membrane, plastid	38.82	35.33
CDX83782	Canola	extracellular, golgi, plastid	38.6	34.71
CDX96676	Canola	extracellular, golgi, plastid	38.38	34.52
CDX71719	Canola	mitochondrion	11.4	31.71
VIT_16s0050g01110.t01	Wine grape	extracellular, golgi	62.28	27.02
CDY12962	Canola	extracellular, plasma membrane, vacuole	22.37	21.34
CDY02392	Canola	extracellular, plasma membrane, vacuole	22.37	21.34
CDY11375	Canola	mitochondrion	19.52	17.55

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:A0A078F8N8	UniProt:A0A078F8N8	EnsemblPlants:CDY08113	ProteinID:CDY08113
ProteinID:CDY08113.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0016798	GO:GO:0071555	EnsemblPlantsGene:GSBRNA2T00125392001	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295
PANTHER:PTHR31339	PANTHER:PTHR31339:SF17	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0004EDC195	:	:	:

Description

BnaA06g16130DBnaA06g16130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8N8]

Coordinates

chrLK031983:-:397476..399625

Molecular Weight (calculated)

49745.3 Da

IEP (calculated)

7.989

GRAVY (calculated)

-0.042

Length

456 amino acids

Sequence
(BLAST)

001: MIQTSLCILV VLTVSGFPMM ESSVESKKGI EYMAMQCRKH KAVLTDFGAV GDGKTSNTKA FRDAIAKLTP QAADGGVQLI VPPGNWLTGS FNLTSHFTLF
101: IQQGATILAS QVESEYPMIP RLPSYGDARF ASLIYGTNLT DVVITGNKGT INGQGKSWWL KYRSGGFNLI SRPLLIEILY SENVQISDIN LIDSPMWNIH
201: PVYCKNVIIK NIKIDAPIDS PNTDGINPDS CTNTLIEDCS VTSGDDCIAV KSGIDQYGIA TAIPTQQLSI RRLTCVSPDS AGIAIGSEMS GGIKDVRIED
301: VTLINTQSAI RIKTAIGRGG YVKDIFARRF TMKNMKYVFW MTGSYKLHPI GFDPNALPEI RNINYRDMTA ENVTISAKLE GIKKDPFTGI CMSNVTMDLS
401: PTTKKLQWNC TDVAGVTSRV KPEPCSLLPS KGPAMDCHFP TDKIPIESVV LNKCTA

Best Arabidopsis Sequence Match ( AT2G23900.1 )
(BLAST)

001: MEFSINPSTL KMIRTSFCIL VVLAISSFSM MEARDLASKG KTNIEYMALN CRKHTAVLTE FGAVGDGKTS NTKAFKEAIT KLAPKAADGG VQLIVPPGKW
101: LTGSFNLTSH FTLFIQKGAT ILASQDESEY PVVAPLPSYG QGRDAAGPTF ASLISGTNLT DVVITGNNGT INGQGKYWWV KYRSGGFKGI TRPYTIEIIF
201: SQNVQISNIT IIDSPAWNIH PVYCNNVIVK GVTILAPIDS PNTDGINPDS CTNTLIEDCY VVSGDDCIAV KSGWDQFGIK VGMPTQQLSI RRLTCISPDS
301: AGIALGSEMS GGIKDVRIED ITLLQTQSAI RIKTAVGRGG YVKDIFARRF TMKTMKYVFW MSGAYNQHPA SGFDPKAMPV ITNINYRDMT ADNVTQPARL
401: DGFKNDPFTK ICMSNIKIDL AAEPKKLLWN CTSISGVSSK VTPKPCSLLP EKGAPVDCAF PVDKIPIESV VLNKCSA

Arabidopsis Description

Glycoside hydrolase family 28 protein/polygalacturonase family protein [Source:UniProtKB/TrEMBL;Acc:Q1PF10]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.