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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • nucleus 1
  • extracellular 6
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 4
  • golgi 4
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra011440.1-P Field mustard extracellular 98.31 97.89
CDX68976 Canola extracellular 97.67 97.88
CDX72404 Canola extracellular 93.22 93.02
CDY46115 Canola extracellular 92.8 92.6
AT4G33440.1 Thale cress extracellular 88.98 88.42
KRH53903 Soybean extracellular, plasma membrane, plastid 67.58 66.88
Solyc06g060170.2.1 Tomato cytosol, golgi, plasma membrane 66.53 64.34
VIT_04s0044g01420.t01 Wine grape extracellular, golgi, vacuole 70.34 64.22
PGSC0003DMT400030711 Potato extracellular, golgi, nucleus 66.1 64.2
GSMUA_Achr2P08050_001 Banana cytosol, extracellular, golgi, mitochondrion 57.84 61.76
TraesCS7D01G320900.1 Wheat plastid 62.08 60.41
TraesCS7A01G323800.3 Wheat plastid 61.86 60.21
Os08t0107300-00 Rice extracellular, mitochondrion 60.81 59.54
TraesCS7B01G224700.1 Wheat plastid 61.02 59.38
KXG24195 Sorghum endoplasmic reticulum, extracellular, plasma membrane, plastid 62.08 58.95
Zm00001d034990_P001 Maize plasma membrane 60.38 57.81
CDY69951 Canola cytosol 14.83 55.56
Zm00001d021964_P001 Maize cytosol 18.64 52.38
CDY13383 Canola extracellular 48.94 51.91
CDX67513 Canola extracellular 48.94 51.68
CDY47619 Canola extracellular, vacuole 48.31 51.35
CDY03516 Canola extracellular, vacuole 48.09 51.13
HORVU7Hr1G077560.12 Barley plastid 51.48 50.31
CDX94222 Canola extracellular 47.88 50.11
CDY10970 Canola extracellular, vacuole 47.46 49.67
CDY25090 Canola extracellular, golgi 46.19 47.6
CDY11403 Canola extracellular, plasma membrane 46.19 47.39
CDX67875 Canola extracellular, golgi 45.97 47.38
CDX76617 Canola extracellular, plasma membrane 45.97 47.17
CDY53228 Canola extracellular 11.02 46.43
CDX92101 Canola extracellular, golgi 43.64 45.27
CDY70893 Canola cytosol 34.32 45.25
CDX95899 Canola extracellular 43.01 44.81
CDY08036 Canola cytosol, nucleus, vacuole 35.17 44.03
CDX74085 Canola cytoskeleton, cytosol, vacuole 35.38 43.95
CDY69255 Canola cytosol 34.96 43.88
CDX82390 Canola extracellular 41.53 43.65
CDY54633 Canola extracellular 41.31 43.53
CDY05885 Canola extracellular 42.37 43.1
CDY44105 Canola cytosol, nucleus, plasma membrane 40.89 42.7
CDY05907 Canola cytosol 39.62 42.69
CDY33922 Canola extracellular 39.62 42.12
CDY08113 Canola extracellular 39.83 41.23
CDY08095 Canola extracellular, plasma membrane 43.22 41.21
CDY65355 Canola extracellular 41.1 41.1
CDX96676 Canola extracellular, golgi, plastid 43.86 40.83
CDX83782 Canola extracellular, golgi, plastid 43.64 40.63
CDY48913 Canola extracellular 40.47 40.55
CDY56436 Canola extracellular, vacuole 40.04 39.87
CDY05643 Canola extracellular, plasma membrane, plastid 40.25 39.75
CDY10897 Canola cytosol, extracellular, peroxisome 20.13 39.75
CDY39678 Canola extracellular 39.83 39.33
CDY20264 Canola extracellular 39.83 39.33
CDY27797 Canola extracellular, mitochondrion, plastid 40.47 38.12
CDY41934 Canola extracellular, mitochondrion, plastid 40.47 38.05
CDY10898 Canola cytosol 4.03 37.25
CDX86247 Canola plasma membrane, plastid 39.41 37.13
CDX71719 Canola mitochondrion 12.71 36.59
CDY10899 Canola cytosol 5.72 28.12
CDY02392 Canola extracellular, plasma membrane, vacuole 23.09 22.8
CDY12962 Canola extracellular, plasma membrane, vacuole 22.67 22.38
CDY11375 Canola mitochondrion 19.7 18.34
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:A0A078CEX7EnsemblPlants:CDX75352ProteinID:CDX75352ProteinID:CDX75352.1
GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016043GO:GO:0016787GO:GO:0071555EnsemblPlantsGene:GSBRNA2T00121231001InterPro:Glyco_hydro_28
InterPro:IPR012334PFAM:PF00295PANTHER:PTHR31339PANTHER:PTHR31339:SF4InterPro:PbH1InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulenceSMART:SM00710SUPFAM:SSF51126TMHMM:TMhelixUniParc:UPI0004EE421ASEG:seg
Description
BnaA01g03500D
Coordinates
chrLK031804:+:769405..772318
Molecular Weight (calculated)
51644.8 Da
IEP (calculated)
6.695
GRAVY (calculated)
-0.088
Length
472 amino acids
Sequence
(BLAST)
001: MESEKTSVVS SITRPSWVLL LLAFTVLAIL SHQISSRSFL PLFIPTTGIH HDPVTCSGFF NHDPSPKRIV MSITEFGGVG DGKTSNTEAF RRAVAHLRGF
101: AAEGGAQLNV PKGTWLSGSF NLTSNFTLFL EQGAVILGSQ DPEEWPIIEP LPSYGRGRER PGGRHISLIH GDNLTNVVIT GENGTIDGQG KMWWELWWNR
201: TLVHTRGHLI EIKNSHNILI SNLTLLNSPF WTVHPVYCSN VVIRDMTILA PMNAPNTDGI DPDSSTNVCI EDCYIESGDD LVAVKSGWDQ YGMAMARPSS
301: NIIIRRISGT TRTCSGVGIG SEMSGGIFNI TIQDIHVWDS AAGLRIKTDV GRGGYISNIT ISNVLLEKVK VPIRFSRGSN DHPDDKWDPK AMPRVNGIYI
401: SNVVSVDSRK APMLLGVEGG TFQDICLRNV TLLGLPESEK WKCKDVSGYA SDVFPLSCPQ LLQKEGSVSQ CL
Best Arabidopsis Sequence Match ( AT4G33440.1 )
(BLAST)
001: MEPEKNPTTV LSAITRPSWA FLLLVFTVLA ILSLQISSNS FLPLWIPTSQ YDDPVTCSGF FNHDPFPNRI VMSITDFGGV GDGKTSNTAA FRRAVRHLEG
101: FAAEGGAQLN VPEGTWLSGS FNLTSNFTLF LERGALILGS KDLDEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI TGENGTIDGQ GKMWWELWWN
201: RTLVHTRGHL IELKNSHNIL ISNLTLLNSP FWTIHPVYCS NVVIRNMTIL APMNAPNTDG IDPDSSTNVC IEDCYIESGD DLVAVKSGWD QYGMAVARPS
301: SNIVIRRISG TTRTCSGVGI GSEMSGGIFN ITVEDIHVWD SAAGLRIKTD KGRGGYISNI TFNNVLLEKV KVPIRFSSGS NDHSDDKWDP KALPRVKGIY
401: ISNVVSLNSR KAPMLLGVEG TSFQDVCLRN VTLLGLPKTE KWKCKDVSGY ASDVFPLSCP QLLQKKGSIA QCSYR
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84K13]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.