Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra011440.1-P | Field mustard | extracellular | 98.31 | 97.89 |
CDX68976 | Canola | extracellular | 97.67 | 97.88 |
CDX72404 | Canola | extracellular | 93.22 | 93.02 |
CDY46115 | Canola | extracellular | 92.8 | 92.6 |
AT4G33440.1 | Thale cress | extracellular | 88.98 | 88.42 |
KRH53903 | Soybean | extracellular, plasma membrane, plastid | 67.58 | 66.88 |
Solyc06g060170.2.1 | Tomato | cytosol, golgi, plasma membrane | 66.53 | 64.34 |
VIT_04s0044g01420.t01 | Wine grape | extracellular, golgi, vacuole | 70.34 | 64.22 |
PGSC0003DMT400030711 | Potato | extracellular, golgi, nucleus | 66.1 | 64.2 |
GSMUA_Achr2P08050_001 | Banana | cytosol, extracellular, golgi, mitochondrion | 57.84 | 61.76 |
TraesCS7D01G320900.1 | Wheat | plastid | 62.08 | 60.41 |
TraesCS7A01G323800.3 | Wheat | plastid | 61.86 | 60.21 |
Os08t0107300-00 | Rice | extracellular, mitochondrion | 60.81 | 59.54 |
TraesCS7B01G224700.1 | Wheat | plastid | 61.02 | 59.38 |
KXG24195 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane, plastid | 62.08 | 58.95 |
Zm00001d034990_P001 | Maize | plasma membrane | 60.38 | 57.81 |
CDY69951 | Canola | cytosol | 14.83 | 55.56 |
Zm00001d021964_P001 | Maize | cytosol | 18.64 | 52.38 |
CDY13383 | Canola | extracellular | 48.94 | 51.91 |
CDX67513 | Canola | extracellular | 48.94 | 51.68 |
CDY47619 | Canola | extracellular, vacuole | 48.31 | 51.35 |
CDY03516 | Canola | extracellular, vacuole | 48.09 | 51.13 |
HORVU7Hr1G077560.12 | Barley | plastid | 51.48 | 50.31 |
CDX94222 | Canola | extracellular | 47.88 | 50.11 |
CDY10970 | Canola | extracellular, vacuole | 47.46 | 49.67 |
CDY25090 | Canola | extracellular, golgi | 46.19 | 47.6 |
CDY11403 | Canola | extracellular, plasma membrane | 46.19 | 47.39 |
CDX67875 | Canola | extracellular, golgi | 45.97 | 47.38 |
CDX76617 | Canola | extracellular, plasma membrane | 45.97 | 47.17 |
CDY53228 | Canola | extracellular | 11.02 | 46.43 |
CDX92101 | Canola | extracellular, golgi | 43.64 | 45.27 |
CDY70893 | Canola | cytosol | 34.32 | 45.25 |
CDX95899 | Canola | extracellular | 43.01 | 44.81 |
CDY08036 | Canola | cytosol, nucleus, vacuole | 35.17 | 44.03 |
CDX74085 | Canola | cytoskeleton, cytosol, vacuole | 35.38 | 43.95 |
CDY69255 | Canola | cytosol | 34.96 | 43.88 |
CDX82390 | Canola | extracellular | 41.53 | 43.65 |
CDY54633 | Canola | extracellular | 41.31 | 43.53 |
CDY05885 | Canola | extracellular | 42.37 | 43.1 |
CDY44105 | Canola | cytosol, nucleus, plasma membrane | 40.89 | 42.7 |
CDY05907 | Canola | cytosol | 39.62 | 42.69 |
CDY33922 | Canola | extracellular | 39.62 | 42.12 |
CDY08113 | Canola | extracellular | 39.83 | 41.23 |
CDY08095 | Canola | extracellular, plasma membrane | 43.22 | 41.21 |
CDY65355 | Canola | extracellular | 41.1 | 41.1 |
CDX96676 | Canola | extracellular, golgi, plastid | 43.86 | 40.83 |
CDX83782 | Canola | extracellular, golgi, plastid | 43.64 | 40.63 |
CDY48913 | Canola | extracellular | 40.47 | 40.55 |
CDY56436 | Canola | extracellular, vacuole | 40.04 | 39.87 |
CDY05643 | Canola | extracellular, plasma membrane, plastid | 40.25 | 39.75 |
CDY10897 | Canola | cytosol, extracellular, peroxisome | 20.13 | 39.75 |
CDY39678 | Canola | extracellular | 39.83 | 39.33 |
CDY20264 | Canola | extracellular | 39.83 | 39.33 |
CDY27797 | Canola | extracellular, mitochondrion, plastid | 40.47 | 38.12 |
CDY41934 | Canola | extracellular, mitochondrion, plastid | 40.47 | 38.05 |
CDY10898 | Canola | cytosol | 4.03 | 37.25 |
CDX86247 | Canola | plasma membrane, plastid | 39.41 | 37.13 |
CDX71719 | Canola | mitochondrion | 12.71 | 36.59 |
CDY10899 | Canola | cytosol | 5.72 | 28.12 |
CDY02392 | Canola | extracellular, plasma membrane, vacuole | 23.09 | 22.8 |
CDY12962 | Canola | extracellular, plasma membrane, vacuole | 22.67 | 22.38 |
CDY11375 | Canola | mitochondrion | 19.7 | 18.34 |
Protein Annotations
Gene3D:2.160.20.10 | MapMan:50.3.2 | GO:A0A078CEX7 | EnsemblPlants:CDX75352 | ProteinID:CDX75352 | ProteinID:CDX75352.1 |
GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0071555 | EnsemblPlantsGene:GSBRNA2T00121231001 | InterPro:Glyco_hydro_28 |
InterPro:IPR012334 | PFAM:PF00295 | PANTHER:PTHR31339 | PANTHER:PTHR31339:SF4 | InterPro:PbH1 | InterPro:Pectin_lyas_fold |
InterPro:Pectin_lyase_fold/virulence | SMART:SM00710 | SUPFAM:SSF51126 | TMHMM:TMhelix | UniParc:UPI0004EE421A | SEG:seg |
Description
BnaA01g03500D
Coordinates
chrLK031804:+:769405..772318
Molecular Weight (calculated)
51644.8 Da
IEP (calculated)
6.695
GRAVY (calculated)
-0.088
Length
472 amino acids
Sequence
(BLAST)
(BLAST)
001: MESEKTSVVS SITRPSWVLL LLAFTVLAIL SHQISSRSFL PLFIPTTGIH HDPVTCSGFF NHDPSPKRIV MSITEFGGVG DGKTSNTEAF RRAVAHLRGF
101: AAEGGAQLNV PKGTWLSGSF NLTSNFTLFL EQGAVILGSQ DPEEWPIIEP LPSYGRGRER PGGRHISLIH GDNLTNVVIT GENGTIDGQG KMWWELWWNR
201: TLVHTRGHLI EIKNSHNILI SNLTLLNSPF WTVHPVYCSN VVIRDMTILA PMNAPNTDGI DPDSSTNVCI EDCYIESGDD LVAVKSGWDQ YGMAMARPSS
301: NIIIRRISGT TRTCSGVGIG SEMSGGIFNI TIQDIHVWDS AAGLRIKTDV GRGGYISNIT ISNVLLEKVK VPIRFSRGSN DHPDDKWDPK AMPRVNGIYI
401: SNVVSVDSRK APMLLGVEGG TFQDICLRNV TLLGLPESEK WKCKDVSGYA SDVFPLSCPQ LLQKEGSVSQ CL
101: AAEGGAQLNV PKGTWLSGSF NLTSNFTLFL EQGAVILGSQ DPEEWPIIEP LPSYGRGRER PGGRHISLIH GDNLTNVVIT GENGTIDGQG KMWWELWWNR
201: TLVHTRGHLI EIKNSHNILI SNLTLLNSPF WTVHPVYCSN VVIRDMTILA PMNAPNTDGI DPDSSTNVCI EDCYIESGDD LVAVKSGWDQ YGMAMARPSS
301: NIIIRRISGT TRTCSGVGIG SEMSGGIFNI TIQDIHVWDS AAGLRIKTDV GRGGYISNIT ISNVLLEKVK VPIRFSRGSN DHPDDKWDPK AMPRVNGIYI
401: SNVVSVDSRK APMLLGVEGG TFQDICLRNV TLLGLPESEK WKCKDVSGYA SDVFPLSCPQ LLQKEGSVSQ CL
001: MEPEKNPTTV LSAITRPSWA FLLLVFTVLA ILSLQISSNS FLPLWIPTSQ YDDPVTCSGF FNHDPFPNRI VMSITDFGGV GDGKTSNTAA FRRAVRHLEG
101: FAAEGGAQLN VPEGTWLSGS FNLTSNFTLF LERGALILGS KDLDEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI TGENGTIDGQ GKMWWELWWN
201: RTLVHTRGHL IELKNSHNIL ISNLTLLNSP FWTIHPVYCS NVVIRNMTIL APMNAPNTDG IDPDSSTNVC IEDCYIESGD DLVAVKSGWD QYGMAVARPS
301: SNIVIRRISG TTRTCSGVGI GSEMSGGIFN ITVEDIHVWD SAAGLRIKTD KGRGGYISNI TFNNVLLEKV KVPIRFSSGS NDHSDDKWDP KALPRVKGIY
401: ISNVVSLNSR KAPMLLGVEG TSFQDVCLRN VTLLGLPKTE KWKCKDVSGY ASDVFPLSCP QLLQKKGSIA QCSYR
101: FAAEGGAQLN VPEGTWLSGS FNLTSNFTLF LERGALILGS KDLDEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI TGENGTIDGQ GKMWWELWWN
201: RTLVHTRGHL IELKNSHNIL ISNLTLLNSP FWTIHPVYCS NVVIRNMTIL APMNAPNTDG IDPDSSTNVC IEDCYIESGD DLVAVKSGWD QYGMAVARPS
301: SNIVIRRISG TTRTCSGVGI GSEMSGGIFN ITVEDIHVWD SAAGLRIKTD KGRGGYISNI TFNNVLLEKV KVPIRFSSGS NDHSDDKWDP KALPRVKGIY
401: ISNVVSLNSR KAPMLLGVEG TSFQDVCLRN VTLLGLPKTE KWKCKDVSGY ASDVFPLSCP QLLQKKGSIA QCSYR
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84K13]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.