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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, secretory
BaCelLo:secretory
MultiLoc:cytosol
PProwler:secretory
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY70893 Canola cytosol 94.95 99.72
CDY69951 Canola cytosol 32.71 97.62
CDY10898 Canola cytosol 13.03 96.08
CDY10899 Canola cytosol 23.94 93.75
CDY44105 Canola cytosol, nucleus, plasma membrane 92.55 76.99
Bra019299.1-P Field mustard extracellular, plasma membrane 97.34 74.24
AT4G23500.1 Thale cress extracellular, plasma membrane 93.62 71.11
GSMUA_Achr4P05580_001 Banana cytosol 52.13 62.82
GSMUA_Achr11P... Banana cytosol 50.53 60.9
GSMUA_Achr11P... Banana cytosol 48.67 60.0
GSMUA_Achr3P27460_001 Banana extracellular, plastid 31.38 58.71
PGSC0003DMT400032104 Potato extracellular 73.14 56.94
Solyc08g081480.2.1 Tomato extracellular 71.81 55.9
CDY05885 Canola extracellular 65.16 52.8
TraesCS7A01G019900.1 Wheat cytosol 37.5 52.61
TraesCS7A01G019500.1 Wheat cytosol 36.97 51.87
CDY65355 Canola extracellular 64.36 51.27
CDY48913 Canola extracellular 64.1 51.17
CDY05907 Canola cytosol 58.51 50.23
CDY08095 Canola extracellular, plasma membrane 65.43 49.7
CDY20264 Canola extracellular 61.97 48.74
CDY39678 Canola extracellular 61.7 48.54
CDY08113 Canola extracellular 58.78 48.46
GSMUA_Achr11P... Banana extracellular 61.17 48.32
EER89047 Sorghum extracellular, vacuole 63.03 47.88
Zm00001d018548_P001 Maize cytosol 29.52 47.84
Os06t0106800-01 Rice extracellular 61.7 47.84
Zm00001d035899_P001 Maize extracellular 61.17 47.33
Os03t0124900-01 Rice extracellular 57.45 47.16
TraesCS5A01G513600.1 Wheat extracellular 56.12 46.78
Zm00001d010681_P001 Maize cytosol 34.84 46.29
TraesCS7D01G016300.2 Wheat extracellular 58.78 45.19
Zm00001d027441_P001 Maize plasma membrane 54.26 44.06
EER95599 Sorghum extracellular 54.26 44.06
TraesCS4B01G344700.1 Wheat extracellular 56.65 43.83
CDY53228 Canola extracellular 12.77 42.86
TraesCS7A01G019400.1 Wheat extracellular, plastid, vacuole 58.78 42.42
TraesCSU01G066000.1 Wheat golgi, unclear 58.78 42.02
TraesCS7A01G019700.1 Wheat cytosol 13.56 41.46
CDY10897 Canola cytosol, extracellular, peroxisome 26.06 41.0
CDX71719 Canola mitochondrion 17.29 39.63
CDX67875 Canola extracellular, golgi 46.54 38.21
CDY25090 Canola extracellular, golgi 46.01 37.77
CDY11403 Canola extracellular, plasma membrane 44.68 36.52
CDY08036 Canola cytosol, nucleus, vacuole 36.17 36.07
CDY03516 Canola extracellular, vacuole 42.02 35.59
CDY47619 Canola extracellular, vacuole 42.02 35.59
CDX74085 Canola cytoskeleton, cytosol, vacuole 35.9 35.53
CDY46115 Canola extracellular 44.41 35.31
CDX94222 Canola extracellular 42.29 35.26
CDY13383 Canola extracellular 41.49 35.06
CDX75352 Canola extracellular 43.88 34.96
CDY10970 Canola extracellular, vacuole 41.76 34.81
CDX72404 Canola extracellular 43.62 34.67
CDX68976 Canola extracellular 43.35 34.61
CDX76617 Canola extracellular, plasma membrane 42.29 34.57
CDX67513 Canola extracellular 40.69 34.23
CDY54633 Canola extracellular 39.1 32.81
CDX82390 Canola extracellular 38.3 32.07
CDX92101 Canola extracellular, golgi 38.56 31.87
CDY33922 Canola extracellular 37.5 31.76
CDX95899 Canola extracellular 38.03 31.57
CDY56436 Canola extracellular, vacuole 37.5 29.75
CDY05643 Canola extracellular, plasma membrane, plastid 37.23 29.29
CDX83782 Canola extracellular, golgi, plastid 39.1 28.99
CDX96676 Canola extracellular, golgi, plastid 39.1 28.99
GSMUA_Achr7P24560_001 Banana cytosol, nucleus, vacuole 13.56 28.98
CDY27797 Canola extracellular, mitochondrion, plastid 38.56 28.94
CDY41934 Canola extracellular, mitochondrion, plastid 38.56 28.88
CDX86247 Canola plasma membrane, plastid 37.23 27.94
CDY12962 Canola extracellular, plasma membrane, vacuole 23.4 18.41
CDY02392 Canola extracellular, plasma membrane, vacuole 23.14 18.2
CDY11375 Canola mitochondrion 24.47 18.15
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:A0A078JS85UniProt:A0A078JS85EnsemblPlants:CDY69255ProteinID:CDY69255
ProteinID:CDY69255.1GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005975GO:GO:0008150
GO:GO:0008152GO:GO:0016787GO:GO:0016798EnsemblPlantsGene:GSBRNA2T00084281001InterPro:Glyco_hydro_28InterPro:IPR012334
PFAM:PF00295PANTHER:PTHR31339PANTHER:PTHR31339:SF7InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSUPFAM:SSF51126
UniParc:UPI0004EF4617:::::
Description
BnaAnng29830DBnaAnng29830D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JS85]
Coordinates
chrLK038962:+:2..3019
Molecular Weight (calculated)
41683.9 Da
IEP (calculated)
5.432
GRAVY (calculated)
-0.190
Length
376 amino acids
Sequence
(BLAST)
001: FLSCCKFVAV TFIHTREIEE SDYEVIEPLP SYGRGRDTDG GRFISLLFGS NLTDVVITGE NGTIDGQGEP WWGKFKRGEL KYTRPYLIEI MHSNGIQISN
101: LTFLNSPSWH IHPVYSSNIV IQGLTILAPV TVPNTDGINP DSCTNTRIED CYIVSGDDCI AVKSGWDQYG INYGMPTKQL LIRRLTCISP DSAVIALGSE
201: MSGGIEDVRA EDIVAINSES GIRIKTAVGR GGYVKDVYVR GMTMKTMKYV FWMTGSYGSH PDEHYDPKAL PVIQNINYQD MVAENVTMPA QLAGITGDEF
301: TGICISNVTI TLSKKPKKVL WNCTDVSGYT SGVTPEPCQL LPEKQPGTVV PCNFPESPIP IEEVKLQRCY TRRRHM
Best Arabidopsis Sequence Match ( AT4G23500.1 )
(BLAST)
001: MTSLSTAGYL LLLLLLPISY DGGFIGAADA EHDLRATDLH NHRHRRHRNH HRGEEFEYSA ISCRAYSASL DEFGAVGDGV TSNTAAFRDA VSQLSRFADY
101: GGSLLFVPAG RWLTGNFNLT SHFTLFLHRD AVILASQEES DYEVIEPLPS YGRGRDTDGG RFISLLFGSN LTDVVITGEN GTIDGQGEPW WGKFKRGELK
201: YTRPYLIEIM HSDGIQISNL TFLNSPSWHI HPVYSSNIYI QGLTILAPVT VPNTDGINPD SCTNTRIEDC YIVSGDDCIA VKSGWDQYGI NYGMPTKQLL
301: IRRLTCISPD SAVIALGSEM SGGIEDVRAE DIVAINSESG IRIKTAIGRG GYVKDVYVRG MTMMTMKYVF WMTGSYGSHP DDHYDPKALP VIQNINYQDM
401: VAENVTMPAQ LAGISGDQFT GICISNVTIT LSKKPKKVLW NCTDVSGYTS GVTPQPCQLL PEKQPGTVVP CNFPEDPIPI DEVKLQRCYS RRRNM
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O81746]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.