Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 6
- vacuole 4
- plasma membrane 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69951 | Canola | cytosol | 24.85 | 97.62 |
| CDY70893 | Canola | cytosol | 69.9 | 96.65 |
| CDY69255 | Canola | cytosol | 71.11 | 93.62 |
| Bra019299.1-P | Field mustard | extracellular, plasma membrane | 93.13 | 93.51 |
| Bra013697.1-P | Field mustard | extracellular, plasma membrane | 92.73 | 93.1 |
| CDY44105 | Canola | cytosol, nucleus, plasma membrane | 80.0 | 87.61 |
| PGSC0003DMT400032104 | Potato | extracellular | 67.88 | 69.57 |
| Solyc08g081480.2.1 | Tomato | extracellular | 67.07 | 68.74 |
| AT3G48950.1 | Thale cress | extracellular | 61.82 | 65.25 |
| GSMUA_Achr4P05580_001 | Banana | cytosol | 40.0 | 63.46 |
| GSMUA_Achr11P... | Banana | cytosol | 39.6 | 62.82 |
| GSMUA_Achr11P... | Banana | cytosol | 38.18 | 61.97 |
| GSMUA_Achr11P... | Banana | extracellular | 59.19 | 61.55 |
| EER89047 | Sorghum | extracellular, vacuole | 60.2 | 60.2 |
| Os06t0106800-01 | Rice | extracellular | 58.79 | 60.0 |
| GSMUA_Achr3P27460_001 | Banana | extracellular, plastid | 24.24 | 59.7 |
| AT2G23900.1 | Thale cress | extracellular | 57.17 | 59.33 |
| Zm00001d035899_P001 | Maize | extracellular | 58.18 | 59.26 |
| TraesCS5A01G513600.1 | Wheat | extracellular | 52.32 | 57.43 |
| TraesCS7D01G016300.2 | Wheat | extracellular | 56.57 | 57.26 |
| Os03t0124900-01 | Rice | extracellular | 52.73 | 56.99 |
| Zm00001d027441_P001 | Maize | plasma membrane | 51.31 | 54.86 |
| EER95599 | Sorghum | extracellular | 51.11 | 54.64 |
| TraesCS7A01G019400.1 | Wheat | extracellular, plastid, vacuole | 56.16 | 53.36 |
| TraesCS7A01G019900.1 | Wheat | cytosol | 28.89 | 53.36 |
| TraesCS4B01G344700.1 | Wheat | extracellular | 52.12 | 53.09 |
| TraesCSU01G066000.1 | Wheat | golgi, unclear | 56.36 | 53.04 |
| TraesCS7A01G019500.1 | Wheat | cytosol | 28.48 | 52.61 |
| AT3G61490.4 | Thale cress | cytosol, plastid | 60.2 | 50.59 |
| Zm00001d018548_P001 | Maize | cytosol | 23.43 | 50.0 |
| Zm00001d010681_P001 | Maize | cytosol | 27.27 | 47.7 |
| AT3G62110.1 | Thale cress | vacuole | 44.85 | 47.13 |
| AT4G23820.1 | Thale cress | extracellular, vacuole | 41.01 | 45.72 |
| AT4G33440.1 | Thale cress | extracellular | 42.22 | 44.0 |
| TraesCS7A01G019700.1 | Wheat | cytosol | 10.91 | 43.9 |
| AT5G41870.1 | Thale cress | extracellular | 39.19 | 43.21 |
| AT3G16850.1 | Thale cress | vacuole | 39.19 | 42.64 |
| GSMUA_Achr7P24560_001 | Banana | cytosol, nucleus, vacuole | 15.15 | 42.61 |
| AT3G06770.5 | Thale cress | extracellular | 37.78 | 41.83 |
| AT5G49215.1 | Thale cress | extracellular, vacuole | 37.58 | 41.43 |
| AT3G42950.1 | Thale cress | extracellular, golgi | 37.58 | 38.43 |
| AT1G19170.1 | Thale cress | cytosol, extracellular, mitochondrion, peroxisome | 38.38 | 37.55 |
| AT3G57790.1 | Thale cress | extracellular, plasma membrane, vacuole | 22.22 | 22.45 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EntrezGene:828450 | ProteinID:AEE84768.1 | EMBL:AK221568 | ArrayExpress:AT4G23500 |
| EnsemblPlantsGene:AT4G23500 | RefSeq:AT4G23500 | TAIR:AT4G23500 | RefSeq:AT4G23500-TAIR-G | EnsemblPlants:AT4G23500.1 | TAIR:AT4G23500.1 |
| EMBL:AY142497 | ProteinID:CAA20471.1 | ProteinID:CAB79305.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 |
| GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005623 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016787 | GO:GO:0016798 | GO:GO:0016829 | GO:GO:0030312 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 |
| RefSeq:NP_194081.1 | UniProt:O81746 | PFAM:PF00295 | PFAM:PF12708 | PO:PO:0000293 | PANTHER:PTHR31339 |
| PANTHER:PTHR31339:SF7 | InterPro:Pectate_lyase_SF_prot | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SUPFAM:SSF51126 | SignalP:SignalP-noTM |
| UniParc:UPI0000052A29 | SEG:seg | : | : | : | : |
Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O81746]
Coordinates
chr4:+:12264462..12267285
Molecular Weight (calculated)
54693.9 Da
IEP (calculated)
5.721
GRAVY (calculated)
-0.215
Length
495 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSLSTAGYL LLLLLLPISY DGGFIGAADA EHDLRATDLH NHRHRRHRNH HRGEEFEYSA ISCRAYSASL DEFGAVGDGV TSNTAAFRDA VSQLSRFADY
101: GGSLLFVPAG RWLTGNFNLT SHFTLFLHRD AVILASQEES DYEVIEPLPS YGRGRDTDGG RFISLLFGSN LTDVVITGEN GTIDGQGEPW WGKFKRGELK
201: YTRPYLIEIM HSDGIQISNL TFLNSPSWHI HPVYSSNIYI QGLTILAPVT VPNTDGINPD SCTNTRIEDC YIVSGDDCIA VKSGWDQYGI NYGMPTKQLL
301: IRRLTCISPD SAVIALGSEM SGGIEDVRAE DIVAINSESG IRIKTAIGRG GYVKDVYVRG MTMMTMKYVF WMTGSYGSHP DDHYDPKALP VIQNINYQDM
401: VAENVTMPAQ LAGISGDQFT GICISNVTIT LSKKPKKVLW NCTDVSGYTS GVTPQPCQLL PEKQPGTVVP CNFPEDPIPI DEVKLQRCYS RRRNM
101: GGSLLFVPAG RWLTGNFNLT SHFTLFLHRD AVILASQEES DYEVIEPLPS YGRGRDTDGG RFISLLFGSN LTDVVITGEN GTIDGQGEPW WGKFKRGELK
201: YTRPYLIEIM HSDGIQISNL TFLNSPSWHI HPVYSSNIYI QGLTILAPVT VPNTDGINPD SCTNTRIEDC YIVSGDDCIA VKSGWDQYGI NYGMPTKQLL
301: IRRLTCISPD SAVIALGSEM SGGIEDVRAE DIVAINSESG IRIKTAIGRG GYVKDVYVRG MTMMTMKYVF WMTGSYGSHP DDHYDPKALP VIQNINYQDM
401: VAENVTMPAQ LAGISGDQFT GICISNVTIT LSKKPKKVLW NCTDVSGYTS GVTPQPCQLL PEKQPGTVVP CNFPEDPIPI DEVKLQRCYS RRRNM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.