Factsheet for Zm00001d035899_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
extracellular 3
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

extracellular: 16602704
extracellular: 18088330
extracellular: 20408568
extracellular: 22192489

msms PMID: 22192489 doi

K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling

Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.

msms PMID: 18088330 doi

S Alvarez, EL Marsh, SG Schroeder, DP Schachtman

Donald Danforth Plant Science Center, 975 North Warson Rd, St Louis, MO, 63132, USA.

msms PMID: 16602704 doi

S Alvarez, JQ Goodger, EL Marsh, S Chen, VS Asirvatham, DP Schachtman

Donald Danforth Plant Science Center, 975 North Warson Road, Saint Louis, Missouri 63132, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89047	Sorghum	extracellular, vacuole	91.15	89.49
Os06t0106800-01	Rice	extracellular	84.77	84.95
CDY69951	Canola	cytosol	20.16	77.78
TraesCS7D01G016300.2	Wheat	extracellular	75.72	75.26
GSMUA_Achr4P05580_001	Banana	cytosol	47.74	74.36
TraesCS7A01G019900.1	Wheat	cytosol	40.95	74.25
TraesCS7A01G019500.1	Wheat	cytosol	40.12	72.76
CDY10898	Canola	cytosol	7.61	72.55
TraesCS7A01G019400.1	Wheat	extracellular, plastid, vacuole	76.95	71.78
TraesCSU01G066000.1	Wheat	golgi, unclear	76.13	70.34
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	28.81	69.65
TraesCS7A01G019700.1	Wheat	cytosol	16.46	65.04
CDY70893	Canola	cytosol	46.71	63.41
KRH00832	Soybean	nucleus	62.96	63.22
KRH59960	Soybean	nucleus	63.99	63.21
PGSC0003DMT400032104	Potato	extracellular	62.35	62.73
KRH40394	Soybean	extracellular, nucleus	62.35	62.6
Solyc08g081480.2.1	Tomato	extracellular	62.14	62.53
VIT_02s0025g00260.t01	Wine grape	extracellular	61.73	62.5
KRH41230	Soybean	nucleus	63.37	62.35
Solyc01g094970.2.1	Tomato	extracellular	52.06	62.16
KRH48075	Soybean	extracellular	61.52	62.03
CDY65355	Canola	extracellular	59.67	61.44
PGSC0003DMT400055769	Potato	extracellular	60.29	61.43
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	60.49	61.38
Bra007609.1-P	Field mustard	extracellular	59.26	61.28
CDY69255	Canola	cytosol	47.33	61.17
CDY48913	Canola	extracellular	59.26	61.15
KRH06594	Soybean	mitochondrion	61.52	60.9
Solyc05g049980.2.1	Tomato	extracellular	60.29	60.29
PGSC0003DMT400000538	Potato	extracellular	58.44	59.79
KRH48076	Soybean	extracellular	58.23	59.7
PGSC0003DMT400094734	Potato	cytosol	12.76	59.05
AT4G23500.1	Thale cress	extracellular, plasma membrane	59.26	58.18
Zm00001d027441_P001	Maize	plasma membrane	55.14	57.88
Bra019299.1-P	Field mustard	extracellular, plasma membrane	58.64	57.81
Bra013697.1-P	Field mustard	extracellular, plasma membrane	58.64	57.81
CDY44105	Canola	cytosol, nucleus, plasma membrane	53.09	57.08
Zm00001d010681_P001	Maize	cytosol	32.3	55.48
Zm00001d018548_P001	Maize	cytosol	25.31	53.02
AT3G61490.4	Thale cress	cytosol, plastid	60.7	50.08
Zm00001d019282_P001	Maize	mitochondrion	47.33	45.28
Zm00001d053395_P001	Maize	extracellular	41.56	44.79
Zm00001d009717_P001	Maize	extracellular	40.53	44.17
Zm00001d034990_P001	Maize	plasma membrane	44.44	43.81
Zm00001d011369_P001	Maize	extracellular	39.51	43.15
Zm00001d023813_P001	Maize	extracellular, vacuole	40.74	42.95
Zm00001d021964_P001	Maize	cytosol	14.61	42.26
Zm00001d034727_P003	Maize	plastid	44.24	41.91
Zm00001d052103_P001	Maize	plasma membrane	39.71	38.99
CDY10899	Canola	cytosol	7.61	38.54
Zm00001d048696_P001	Maize	extracellular	38.68	38.06
Zm00001d020615_P001	Maize	plastid	39.71	37.4
Solyc06g030520.1.1	Tomato	cytosol	6.79	28.95
KRH33610	Soybean	plastid	10.49	28.33
PGSC0003DMT400065330	Potato	nucleus	10.29	24.39
Zm00001d020931_P001	Maize	extracellular	22.02	23.01

Protein Annotations

EntrezGene:100284797	Gene3D:2.160.20.10	MapMan:50.3.2	ProteinID:AQK79908.1	UniProt:B4G0U5	EMBL:BT042983
GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798
GO:GO:0016829	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295	PANTHER:PTHR31339
PANTHER:PTHR31339:SF7	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI00017B775D	EnsemblPlantsGene:Zm00001d035899	EnsemblPlants:Zm00001d035899_P001	EnsemblPlants:Zm00001d035899_T001	SEG:seg

Description

Pectin lyase-like superfamily protein

Coordinates

chr6:-:58736545..58738571

Molecular Weight (calculated)

51747.4 Da

IEP (calculated)

6.774

GRAVY (calculated)

-0.061

Length

486 amino acids

Sequence
(BLAST)

001: MAPRTLGLNA APLLQILRSL CLLALAAAAA VSGRRHGASP ARGSGQSMYL APACRAHTAS VADFGGVGDG TTSNTAAFRS AVDHLSQYSG EGGGGGMLYV
101: PAGKWLTGPF NLTSHFTLYL HQDAVILGSQ DVGEWPIVDP LPSYGRGRDK VGGRFASLIG GSNLTDVVIT GSNGTIDGQG AMWWSKFHKN QLKYTRGYLI
201: ELMHSDTIYI SNLTLLNSPA WNIHPVYSSN IVVQGITILA PTNSPNTDGI NPDSCSHVRI EDCYIVSGDD CVAIKSGWDE YGISYGMPSQ HIVIRRLTCV
301: SPTSAVIALG SEMSGGIQDV RAEDITAINT ESAVRIKTAV GRGAYVRDVF ARRMTLTTMK RVFWMTGDYK SHPDDKYDPN AVPVVANISY QDVVATGVYK
401: EAARLQGIQG APFRGICVAN VTADLSKSRK YPWNCADIEG VSANVSPAPC DPLQGAHDGA CPFPTDTLPI DQVTVQQCAY DIPATN

Best Arabidopsis Sequence Match ( AT3G61490.4 )
(BLAST)

001: MSLFAITSAF SEDNVTAISS NQLIPLNDKI IANLIRSPNT QTKSLNLASS FLHSLSAYKY SYSLLLTSSS NHLASPHSQR AHKSQVILFL SLKHKHTQMY
101: KQTHHFCFQI YKTMKNILAC IVTIITLSNL ITISQGRRVS QSFETFEYTA IICRSHSASI TEYGGVGDGK TLNTKAFQSA VDHLSQYSSE GGAQLFVPAG
201: KWLTGSFNLT SHFTLFLHKD AILLAAQDLN EYPILKALPS YGRGRDAAGG RFASLIFGTN LSDVIITGNN GTIDGQGSFW WQKFHGGKLK YTRPYLIELM
301: FSDTIQISNL TFLDSPSWNI HPVYSSNIIV KGVTIIAPVK SPNTDGINPD SCTNTRIEDC YIISGDDCIA VKSGWDEYGI SFGMPTKHLV IRRLTCISPY
401: SAAIALGSEM SGGIEDVRAE DITAYQTESG VRIKTAVGRG AFVKNIYVKG MNLHTMKWVF WMTGNYKAHA DSHYDPHALP EITGINYRDI VAENVSMAGR
501: LEGISGDPFT GICISNATIS MAAKHKKAIW MCSDVEGVTS GVDPKPCDLL DGQESETTKK KMIDGGCDFP TDVLEIDNVE LKTCSYQMS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS88]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.