Factsheet for Zm00001d019282_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
extracellular 3
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	mitochondrion

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96131	Sorghum	extracellular, mitochondrion	87.99	89.58
Os07t0245200-01	Rice	plasma membrane	72.44	82.51
GSMUA_Achr8P06180_001	Banana	extracellular	54.33	70.23
Zm00001d034727_P003	Maize	plastid	70.08	69.4
GSMUA_AchrUn_...	Banana	extracellular	53.35	68.96
VIT_07s0005g02590.t01	Wine grape	extracellular, vacuole	58.66	63.95
KRH69147	Soybean	nucleus	57.09	62.5
KRG96607	Soybean	extracellular	57.28	62.18
KRH33649	Soybean	nucleus	56.69	62.07
KRH68340	Soybean	nucleus	57.09	61.97
AT3G62110.1	Thale cress	vacuole	57.09	61.57
CDY25090	Canola	extracellular, golgi	54.72	60.7
Bra003485.1-P	Field mustard	extracellular, golgi	54.33	60.26
CDX67875	Canola	extracellular, golgi	54.33	60.26
Bra007662.1-P	Field mustard	extracellular, plasma membrane	53.54	59.13
CDY11403	Canola	extracellular, plasma membrane	53.35	58.91
CDX76617	Canola	extracellular, plasma membrane	52.36	57.83
Zm00001d009717_P001	Maize	extracellular	42.52	48.43
Zm00001d023813_P001	Maize	extracellular, vacuole	43.9	48.37
Zm00001d018548_P001	Maize	cytosol	22.05	48.28
Zm00001d035899_P001	Maize	extracellular	45.28	47.33
Zm00001d011369_P001	Maize	extracellular	41.14	46.97
Zm00001d027441_P001	Maize	plasma membrane	42.72	46.87
Zm00001d048696_P001	Maize	extracellular	45.08	46.36
Zm00001d010681_P001	Maize	cytosol	25.79	46.29
Zm00001d034990_P001	Maize	plasma membrane	43.9	45.23
Zm00001d053395_P001	Maize	extracellular	40.16	45.23
Zm00001d021964_P001	Maize	cytosol	13.58	41.07
Zm00001d052103_P001	Maize	plasma membrane	39.76	40.81
Zm00001d020615_P001	Maize	plastid	38.98	38.37
Zm00001d020931_P001	Maize	extracellular	20.87	22.8

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	UniProt:A0A1D6HWL6	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0016829	GO:GO:0071555	InterPro:Glyco_hydro_28
InterPro:IPR012334	ProteinID:ONM52617.1	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF20	InterPro:PbH1
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI00084473C6
EnsemblPlantsGene:Zm00001d019282	EnsemblPlants:Zm00001d019282_P001	EnsemblPlants:Zm00001d019282_T001	SEG:seg	:	:

Description

Pectin lyase-like superfamily protein

Coordinates

chr7:+:25495547..25499141

Molecular Weight (calculated)

54554.7 Da

IEP (calculated)

6.637

GRAVY (calculated)

-0.000

Length

508 amino acids

Sequence
(BLAST)

001: MLNCSRKMGR SASVLQVLLV SATIVVAQTQ WASGVWGMYC EDLTASVERP HRASVTDFGA VGDGATLNTK AFQNALFHLD SFAKKGGAQL FVPAGRWLTG
101: SFSLISHLTL SLDKDAVILG SPDSSDWPVI DALPSYGRGR ELPGKRHQSL IFGSNLTDVI ITGANGTVDG QGAVWWDWFH NHTLNYTRPP LVELMYSTRV
201: VISNLTFINS PFWNIHPVYC SQVLVQHLTI LAPISSPNTD GIDPDSSTNV CIEDCYVRNG DDIIVIKSGW DEYGISFAHP SSNISIRNIT GQTRNSAGLA
301: FGSEMSGGIS DVRAEGVRIV NSVHGIRIKT APGRGGYVKN VYVADVSFDN VSIAIRITGN YGEHPDDGYD RNALPTISNI TIKDVVGVNI GVAGMLQGIP
401: GDSFSGICLS NVSLSVRSTD PWNCSLVEGY SSSVSPEVCE QLRATPGPGS GQMCYGGNYP AAAAQPQPPQ KSGASRLVLG WLVLVRYGCR HITWFLLANE
501: LPGLFNKG

Best Arabidopsis Sequence Match ( AT3G62110.2 )
(BLAST)

001: MKRSFLLLYV LLVQAFYGAW CSVGESLHCE YSNLASLHRP HSVSITEFGA VGDGVTLNTK AFQNALFYLN SFSDKGGAKL FVPAGQWLTG SFDLISHLTL
101: WLDKGATILG STSSENWPVV DPLPSYGRGR ELPGRRHRSL IYGQNLTDVV ITGENGTIDG QGTVWWDWFR NGELNYTRPH LVELMNSTGL IISNLTFLNS
201: PFWNIHPVYC RDVVVKNLTI LAPLESPNTD GVDPDSSTNV CIEDCYIVTG DDLVSIKSGW DEYGISYARP SSKIKINRLT GQTTSSSGIA IGSEMSGGVS
301: EIYIKDLHLF NSNTGIRIKT SAGRGGYVRN VHILNVKLDN VKKAIRFTGK YGEHPDEKYD PKALPAIEKI TFENVNGDGI GVAGLLEGIE GDVFKNICFL
401: NVTLRVKKNS KKSPWECSNV RGYSQWVSPE ITCDSLKESI FPEHGSDCFG LSENNMEISS GLSRSPWLLS W

Arabidopsis Description

AT3g62110 [Source:UniProtKB/TrEMBL;Acc:Q9FPJ2]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.