Factsheet for Bra003485.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67875	Canola	extracellular, golgi	100.0	100.0
AT3G62110.1	Thale cress	vacuole	91.92	89.38
Bra007662.1-P	Field mustard	extracellular, plasma membrane	89.52	89.13
VIT_07s0005g02590.t01	Wine grape	extracellular, vacuole	67.9	66.74
KRH33649	Soybean	nucleus	66.38	65.52
KRH69147	Soybean	nucleus	66.16	65.3
KRG96607	Soybean	extracellular	65.28	63.89
KRH68340	Soybean	nucleus	65.07	63.68
GSMUA_AchrUn_...	Banana	extracellular	54.15	63.1
GSMUA_Achr8P06180_001	Banana	extracellular	53.93	62.85
TraesCS4A01G358700.1	Wheat	extracellular	59.17	60.36
Os03t0833800-01	Rice	extracellular	60.92	58.61
EER90587	Sorghum	extracellular	60.7	58.53
TraesCS5B01G513100.1	Wheat	extracellular	60.04	57.77
HORVU5Hr1G117470.3	Barley	extracellular	59.61	57.35
EER96131	Sorghum	extracellular, mitochondrion	61.14	56.11
Os07t0245200-01	Rice	plasma membrane	53.93	55.38
Zm00001d019282_P001	Maize	mitochondrion	60.26	54.33
Zm00001d034727_P003	Maize	plastid	60.04	53.61
TraesCS5D01G513600.1	Wheat	plastid	59.83	51.6
Bra013734.1-P	Field mustard	extracellular, vacuole	46.07	47.52
Bra022182.1-P	Field mustard	extracellular, golgi	46.94	47.46
Bra001642.1-P	Field mustard	vacuole	46.07	46.78
Bra001215.1-P	Field mustard	extracellular	45.41	46.33
Bra037429.1-P	Field mustard	extracellular	44.54	45.95
Bra028511.1-P	Field mustard	extracellular	44.76	45.86
Bra019264.1-P	Field mustard	extracellular, vacuole	44.98	45.68
Bra011440.1-P	Field mustard	extracellular	46.94	45.36
Bra037005.1-P	Field mustard	extracellular	46.07	44.23
Bra019299.1-P	Field mustard	extracellular, plasma membrane	47.38	44.02
Bra020656.1-P	Field mustard	extracellular, plasma membrane	44.98	43.83
Bra013697.1-P	Field mustard	extracellular, plasma membrane	47.16	43.81
Bra007609.1-P	Field mustard	extracellular	44.76	43.62
Bra018004.1-P	Field mustard	cytosol	40.39	42.33
Bra018023.1-P	Field mustard	extracellular	43.01	42.0
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	39.3	35.86
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	39.3	35.5
Bra032138.1-P	Field mustard	cytosol	41.7	23.88
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	23.14	22.18
Bra007626.1-P	Field mustard	mitochondrion	26.42	20.83

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra003485	EnsemblPlants:Bra003485.1	EnsemblPlants:Bra003485.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4CH02	PFAM:PF00295	PFAM:PF12708	PANTHER:PTHR31339
PANTHER:PTHR31339:SF9	InterPro:PbH1	InterPro:Pectate_lyase_SF_prot	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI00025418D9	:	:	:

Description

AT3G62110 (E=1e-201) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA07:-:13439791..13441916

Molecular Weight (calculated)

50880.0 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.210

Length

458 amino acids

Sequence
(BLAST)

001: MKRSFLLWYV LLVQAFFYGA WYSVGGSLHC EYSNSVILHR PHSVSITEFG AVGDGVTLNT KAFQNALFYL NSFSDKGGAK LFVPAGQWLT GSFDLISHLT
101: SENWPVVDPL PSYGRGRELP GRRHRSLIYG QNLTDVVITG ENGTIDGQGS VWWDWFRHGE LNYTRPHIVE LINTTGLIIS NLTFLNSPFW NIHPVYCRDV
201: LVKNLTILAP LDSPNTDGVD PDSSTNVCIE DCYIVTGDDL VSIKSGWDEY GISYARPSSK IKINRLTGQT TSSSGIAIGS EMSGGVSDIY IKDLHLFNSN
301: TGIRIKTSPG RGGYVRNVHV SNVKFHNVQK AIRFTGKYGE HPDENFDPKA LPVIEKITFE NINGEDIGVA GLLEGIEGDE FKNICFLNVT LTVKKNSKKA
401: PWKCSHVRGY SQWVSPEITC DSFGESIFPE HSSDCFGLSE NNLEKSSGLS RSPWLLSW

Best Arabidopsis Sequence Match ( AT3G62110.2 )
(BLAST)

001: MKRSFLLLYV LLVQAFYGAW CSVGESLHCE YSNLASLHRP HSVSITEFGA VGDGVTLNTK AFQNALFYLN SFSDKGGAKL FVPAGQWLTG SFDLISHLTL
101: WLDKGATILG STSSENWPVV DPLPSYGRGR ELPGRRHRSL IYGQNLTDVV ITGENGTIDG QGTVWWDWFR NGELNYTRPH LVELMNSTGL IISNLTFLNS
201: PFWNIHPVYC RDVVVKNLTI LAPLESPNTD GVDPDSSTNV CIEDCYIVTG DDLVSIKSGW DEYGISYARP SSKIKINRLT GQTTSSSGIA IGSEMSGGVS
301: EIYIKDLHLF NSNTGIRIKT SAGRGGYVRN VHILNVKLDN VKKAIRFTGK YGEHPDEKYD PKALPAIEKI TFENVNGDGI GVAGLLEGIE GDVFKNICFL
401: NVTLRVKKNS KKSPWECSNV RGYSQWVSPE ITCDSLKESI FPEHGSDCFG LSENNMEISS GLSRSPWLLS W

Arabidopsis Description

AT3g62110 [Source:UniProtKB/TrEMBL;Acc:Q9FPJ2]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.