Factsheet for Bra020656.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

nucleus 1
plastid 2
extracellular 3
plasma membrane 4
endoplasmic reticulum 2
vacuole 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33922	Canola	extracellular	93.83	99.32
Bra037429.1-P	Field mustard	extracellular	83.4	88.29
AT5G49215.1	Thale cress	extracellular, vacuole	80.64	84.41
Bra001215.1-P	Field mustard	extracellular	68.94	72.16
KRH37050	Soybean	extracellular, vacuole	62.98	65.49
KRH02302	Soybean	extracellular	61.06	63.92
KRH12027	Soybean	extracellular, vacuole	63.4	63.27
KRH50791	Soybean	extracellular	60.43	63.25
VIT_05s0077g01760.t01	Wine grape	extracellular, vacuole	60.43	62.42
Bra022182.1-P	Field mustard	extracellular, golgi	57.45	59.6
Bra001642.1-P	Field mustard	vacuole	55.74	58.09
PGSC0003DMT400081328	Potato	extracellular	56.6	57.95
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	51.7	57.58
PGSC0003DMT400018848	Potato	extracellular	55.53	57.11
Solyc06g009790.2.1	Tomato	extracellular	54.68	56.24
Os12t0554800-01	Rice	cytosol, extracellular	50.43	55.9
Os11t0658800-01	Rice	extracellular	53.19	55.68
Solyc09g075460.2.1	Tomato	extracellular	56.6	55.42
TraesCS5B01G097100.2	Wheat	extracellular	52.77	55.23
TraesCS5D01G102900.1	Wheat	unclear	52.34	54.79
TraesCS4D01G146700.1	Wheat	extracellular, golgi, vacuole	53.19	54.7
KXG29050	Sorghum	extracellular	52.34	54.55
TraesCS4A01G168800.1	Wheat	extracellular, golgi, vacuole	52.77	54.27
TraesCS4B01G144700.2	Wheat	extracellular, golgi, vacuole	52.55	54.05
Zm00001d023813_P001	Maize	extracellular, vacuole	52.55	53.58
VIT_05s0077g01740.t01	Wine grape	nucleus	26.38	52.54
TraesCS5A01G090800.2	Wheat	extracellular, golgi, mitochondrion, plastid	52.55	52.11
GSMUA_Achr11P...	Banana	extracellular, vacuole	48.51	51.24
Zm00001d048696_P001	Maize	extracellular	51.91	49.39
HORVU5Hr1G023800.7	Barley	plastid	52.55	48.15
Bra003485.1-P	Field mustard	extracellular, golgi	43.83	44.98
GSMUA_Achr11P...	Banana	extracellular	51.7	44.26
Bra013734.1-P	Field mustard	extracellular, vacuole	41.7	44.14
Bra007662.1-P	Field mustard	extracellular, plasma membrane	42.77	43.7
Bra028511.1-P	Field mustard	extracellular	41.49	43.62
Bra019264.1-P	Field mustard	extracellular, vacuole	41.7	43.46
Bra011440.1-P	Field mustard	extracellular	40.0	39.66
Bra007609.1-P	Field mustard	extracellular	39.57	39.57
Bra018004.1-P	Field mustard	cytosol	36.6	39.36
Bra013697.1-P	Field mustard	extracellular, plasma membrane	41.06	39.15
Bra019299.1-P	Field mustard	extracellular, plasma membrane	40.85	38.95
Bra018023.1-P	Field mustard	extracellular	38.72	38.81
Bra037005.1-P	Field mustard	extracellular	38.72	38.16
GSMUA_Achr11P...	Banana	cytosol	53.4	37.92
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	37.45	35.06
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	36.6	33.92
Bra032138.1-P	Field mustard	cytosol	39.79	23.38
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	20.85	20.5
Bra007626.1-P	Field mustard	mitochondrion	21.7	17.56

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra020656	EnsemblPlants:Bra020656.1	EnsemblPlants:Bra020656.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4DVW2	PFAM:PF00295	PANTHER:PTHR31339
PANTHER:PTHR31339:SF15	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	UniParc:UPI000254650A	SEG:seg

Description

AT5G49215 (E=1e-213) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA02:+:23896300..23898700

Molecular Weight (calculated)

50860.0 Da

IEP (calculated)

5.646

GRAVY (calculated)

0.005

Length

470 amino acids

Sequence
(BLAST)

001: MPVIEAYKSN PSIVLLSRFL GLRHFDGSVA LVLLLALSCL IRSHGAGNVC DLGRRPNTRP HSVSILEFGA VGDGKTLNTI AFQNAVFYLK SFADKGGAQL
101: YVPPGRWLTG SFNLTSHLTL FLEKDAVILA SQDPLHWQVV DPLPSYGRGI DLPGRRYMSL INGYMLHDVV VTGDNGTIDG QGLLWWDRFN SHSLKHSRPH
201: LVEFVSSEDV TVSNLTFLNA PAYTIHSVYC SHVYINKVTA TTSPESPYTI GIVPDSSNNV CIQDSSISMG YDAISLKSGW DEYGISYARP TANVQIQNVY
301: LKAASGASIS FGSEMSGGIS DVVVRDAHIH NSLSGVAFRT TKGRGGYMKE IDVSNINMVN VGTAFLANGS FGTHPDSGFD ANAYPLVSHI MLHDIVGENI
401: SIAGEFFGTK ESPFTSVLLS NISLSMNSDS PDDDDSWQCS YVEGSSESVV PEPCFELKGF ESSYGRAVAL

Best Arabidopsis Sequence Match ( AT5G49215.1 )
(BLAST)

001: MPVSVALVLL LTLSSVILIN GRSYGVGNIC DRGRRPSERP HSVKITDFGA VGDGKTLNTL AFQNAVFYLK SFADKGGAQL YVPPGRWLTG SFNLTSHLTL
101: FLEKDAVILA SQDPSHWQVT DALPSYGRGI DLPGKRYMSL INGDMLHDVV VTGDNGTIDG QGLVWWDRFN SHSLEYSRPH LVEFVSAENV IVSNLTFLNA
201: PAYTIHSVYC RNLYIHRVTA NTCPESPYTI GIVPDSSENV CIQESSINMG YDAISLKSGC DEYGLSYARP TANVQIRNVY LRAASGSSIS FGSEMSGGIS
301: DVEVSDAHIH NSLSGIAFRT TNGRGGYIKE IDISNIHMVN VGTAFLANGS FGTHPDSGFD ENAYPLVSHI RLHDIVGENI STAGYFFGTK ESPFTSILLS
401: NISLSIKNSA SPADSWQCSY VDGSSEFVVP EPCLELKSFD SYYGRAEAL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8RX04]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.