Factsheet for GSMUA_Achr11P13970_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 4
plasma membrane 4
golgi 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	69.89	73.7
GSMUA_Achr11P...	Banana	extracellular	76.63	62.11
Os12t0554800-01	Rice	cytosol, extracellular	58.2	61.08
Os11t0658800-01	Rice	extracellular	59.1	58.57
KXG29050	Sorghum	extracellular	59.1	58.31
TraesCS5D01G102900.1	Wheat	unclear	58.65	58.13
TraesCS5B01G097100.2	Wheat	extracellular	58.43	57.91
TraesCS4D01G146700.1	Wheat	extracellular, golgi, vacuole	59.1	57.55
TraesCS4A01G168800.1	Wheat	extracellular, golgi, vacuole	58.43	56.89
VIT_05s0077g01740.t01	Wine grape	nucleus	30.11	56.78
TraesCS4B01G144700.2	Wheat	extracellular, golgi, vacuole	58.2	56.67
VIT_05s0077g01760.t01	Wine grape	extracellular, vacuole	57.08	55.82
TraesCS5A01G090800.2	Wheat	extracellular, golgi, mitochondrion, plastid	59.1	55.49
Zm00001d023813_P001	Maize	extracellular, vacuole	57.3	55.31
GSMUA_Achr8P06180_001	Banana	extracellular	48.31	54.71
CDY08036	Canola	cytosol, nucleus, vacuole	46.29	54.64
GSMUA_AchrUn_...	Banana	extracellular	48.09	54.45
KRH37050	Soybean	extracellular, vacuole	55.28	54.42
CDX74085	Canola	cytoskeleton, cytosol, vacuole	46.07	53.95
KRH02302	Soybean	extracellular	53.93	53.45
KRH50791	Soybean	extracellular	53.71	53.23
VIT_07s0005g00890.t01	Wine grape	extracellular	56.4	52.62
KRH12027	Soybean	extracellular, vacuole	55.51	52.44
Zm00001d048696_P001	Maize	extracellular	57.75	52.02
HORVU5Hr1G023800.7	Barley	plastid	59.33	51.46
KRH69264	Soybean	extracellular	52.58	51.43
CDY33922	Canola	extracellular	50.79	50.9
KRH31843	Soybean	extracellular	52.13	50.88
Bra037429.1-P	Field mustard	extracellular	49.66	49.77
CDY54633	Canola	extracellular	49.89	49.55
PGSC0003DMT400018848	Potato	extracellular	50.79	49.45
PGSC0003DMT400081328	Potato	extracellular	50.79	49.24
AT3G16850.1	Thale cress	vacuole	50.34	49.23
CDX82390	Canola	extracellular	49.66	49.22
AT3G06770.5	Thale cress	extracellular	49.44	49.22
Solyc06g009790.2.1	Tomato	extracellular	50.34	49.02
Bra001642.1-P	Field mustard	vacuole	49.66	49.0
Bra022182.1-P	Field mustard	extracellular, golgi	49.66	48.79
AT5G49215.1	Thale cress	extracellular, vacuole	49.21	48.78
Bra020656.1-P	Field mustard	extracellular, plasma membrane	51.24	48.51
CDX92101	Canola	extracellular, golgi	49.44	48.35
CDX95899	Canola	extracellular	49.21	48.34
KRG96478	Soybean	endoplasmic reticulum, extracellular	52.13	48.13
Solyc09g075460.2.1	Tomato	extracellular	51.46	47.71
KRH68221	Soybean	extracellular	52.81	47.28
CDY05643	Canola	extracellular, plasma membrane, plastid	50.79	47.28
Bra001215.1-P	Field mustard	extracellular	47.64	47.22
CDY56436	Canola	extracellular, vacuole	50.11	47.05
GSMUA_Achr11P...	Banana	cytosol	67.64	45.47
CDX86247	Canola	plasma membrane, plastid	49.89	44.31
GSMUA_Achr4P08470_001	Banana	extracellular	40.67	44.04
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	39.33	43.1
GSMUA_Achr6P14280_001	Banana	cytosol	38.65	42.79
GSMUA_Achr8P19900_001	Banana	cytosol	39.55	42.41
GSMUA_Achr10P...	Banana	cytosol	38.43	41.5
GSMUA_Achr11P...	Banana	cytosol	28.99	41.35
GSMUA_Achr4P05580_001	Banana	cytosol	28.54	40.71
GSMUA_Achr2P08050_001	Banana	cytosol, extracellular, golgi, mitochondrion	39.55	39.82
GSMUA_Achr11P...	Banana	cytosol	27.19	39.67
GSMUA_Achr11P...	Banana	extracellular	39.78	37.18
GSMUA_Achr11P...	Banana	mitochondrion	38.65	35.03
GSMUA_Achr3P10280_001	Banana	mitochondrion	37.3	34.66
GSMUA_Achr9P18190_001	Banana	mitochondrion	37.98	34.42
GSMUA_Achr5P22120_001	Banana	extracellular	35.96	32.52
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	35.73	31.86
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	12.58	31.82
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	13.71	30.35
GSMUA_Achr3P11090_001	Banana	extracellular	20.0	19.18

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	EnsemblPlantsGene:GSMUA_Achr11G13970_001	EnsemblPlants:GSMUA_Achr11P13970_001	EnsemblPlants:GSMUA_Achr11T13970_001
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0RS27	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF5
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM
UniParc:UPI000296205D	SEG:seg	:	:	:	:

Description

Putative Probable polygalacturonase [Source:GMGC_GENE;Acc:GSMUA_Achr11G13970_001]

Coordinates

chr11:+:15064456..15067283

Molecular Weight (calculated)

48113.6 Da

IEP (calculated)

5.406

GRAVY (calculated)

-0.031

Length

445 amino acids

Sequence
(BLAST)

001: MYQLDCPRFI VRWASLHSNP SDLVLLLLAI AVVVQGNGRG GDGYCNHKRG PTPRPHNKGG AQLYVPKGRW LTGSFNLTSH LTLFLDKDAV IIGSQDASHW
101: PVVEPLPSYG QGIDLPGPRH CSLINGYNLT DIVITGMFLS DFGDNGTIDG QGSVWWEWFH SQTLNYSRPH LLELVSSSDI VISNLTFLNP PAWSIHPVYS
201: SNVEIQNVKI HCSSASSYTN GIVPDSCSNC CILDCSISVG HDAIALKSGW DNYGISFNRP SSNIHINNVH LQTSLGSALA FGSEMSGGIS DIQVEQLHIH
301: DSFTGIKFKT TRGRGGYIED IIISDVEMEN VHEAFQITGH CGAHPDDQYD PDALPMIKQI TIKDVVGTNI SIAGSLSGMD HGPFSAICLA NISLSVTSGA
401: SNSWICSNVS GFSESVVPQP CSDLSSNSSL SCFSLENFNA LVDFQ

Best Arabidopsis Sequence Match ( AT3G16850.1 )
(BLAST)

001: MKMPVALVWL LAFTILLISG EGNNAICKEN FKLDPRPHSV SILEFGAVGD GKTLNTIAFQ NAVFYLKSFA DKGGAQLYVP PGKWLTGSFN LTSHLTLFLE
101: KGATILASPD PSHWDVVSPL PSYGRGIELP GKRYRSLING DNLIDVVITG ENGTFDGQGA AWWEWLESGS LNYSRPHIIE FVSSKHILIS NLTFLNAPAI
201: NIHPVYCSQI HIRKVLIETS VDSPHVLGVA PDSSDNVCIE DSTINVGHDA VSLKSGWDQY GIHYGRPTTA VHIRNLRLKS PTGAGISFGS EMSGGVSDVT
301: VERLNIHSSL IGVAFRTTRG RGGYIRNITI SDVDLTSVDT AIVANGHTGS HPDDKFDRDA LPVVTHIVMR NFTGVDIGVA GNLTGIGESP FTSICLADIH
401: LQTRSEESWI CSNVSGFSDD VSPEPCQELM SSPSSCFAGG SIYEGDATAQ SYYSW

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94C86]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.