Factsheet for GSMUA_Achr11P02870_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	61.97	94.55
GSMUA_Achr11P...	Banana	cytosol	58.82	91.8
CDY10898	Canola	cytosol	7.98	74.51
GSMUA_Achr4P05580_001	Banana	cytosol	46.43	70.83
CDY69951	Canola	cytosol	18.7	70.63
PGSC0003DMT400094734	Potato	cytosol	14.92	67.62
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	28.36	67.16
CDY70893	Canola	cytosol	47.69	63.41
Solyc01g094970.2.1	Tomato	extracellular	54.2	63.39
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	62.82	62.42
PGSC0003DMT400055769	Potato	extracellular	62.4	62.26
Solyc08g081480.2.1	Tomato	extracellular	62.82	61.9
VIT_02s0025g00260.t01	Wine grape	extracellular	62.4	61.88
KRH59960	Soybean	nucleus	63.87	61.79
CDY69255	Canola	cytosol	48.32	61.17
PGSC0003DMT400032104	Potato	extracellular	61.97	61.08
KRH48075	Soybean	extracellular	61.76	61.0
KRH48076	Soybean	extracellular	60.71	60.97
KRH41230	Soybean	nucleus	63.03	60.73
KRH00832	Soybean	nucleus	61.34	60.33
KRH40394	Soybean	extracellular, nucleus	61.13	60.12
Solyc05g049980.2.1	Tomato	extracellular	61.13	59.88
CDY65355	Canola	extracellular	59.24	59.75
KRH06594	Soybean	mitochondrion	61.55	59.67
PGSC0003DMT400000538	Potato	extracellular	59.45	59.58
Bra007609.1-P	Field mustard	extracellular	58.61	59.36
CDY48913	Canola	extracellular	58.61	59.24
AT4G23500.1	Thale cress	extracellular, plasma membrane	61.55	59.19
Bra013697.1-P	Field mustard	extracellular, plasma membrane	60.71	58.62
Bra019299.1-P	Field mustard	extracellular, plasma membrane	60.5	58.42
CDY44105	Canola	cytosol, nucleus, plasma membrane	54.83	57.74
GSMUA_Achr8P06180_001	Banana	extracellular	43.07	52.16
CDY10899	Canola	cytosol	10.29	51.04
GSMUA_AchrUn_...	Banana	extracellular	41.6	50.38
AT3G61490.4	Thale cress	cytosol, plastid	60.08	48.56
GSMUA_Achr4P08470_001	Banana	extracellular	41.81	48.42
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	17.23	46.59
GSMUA_Achr6P14280_001	Banana	cytosol	39.29	46.52
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	41.18	46.45
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	39.5	46.31
GSMUA_Achr8P19900_001	Banana	cytosol	39.71	45.54
GSMUA_Achr10P...	Banana	cytosol	39.29	45.39
GSMUA_Achr2P08050_001	Banana	cytosol, extracellular, golgi, mitochondrion	38.87	41.86
GSMUA_Achr3P10280_001	Banana	mitochondrion	41.6	41.34
GSMUA_Achr11P...	Banana	extracellular, vacuole	37.18	39.78
GSMUA_Achr9P18190_001	Banana	mitochondrion	40.76	39.51
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	41.18	39.28
GSMUA_Achr5P22120_001	Banana	extracellular	40.13	38.82
GSMUA_Achr11P...	Banana	mitochondrion	39.5	38.29
GSMUA_Achr11P...	Banana	extracellular	40.34	34.97
Solyc06g030520.1.1	Tomato	cytosol	7.14	29.82
GSMUA_Achr11P...	Banana	cytosol	39.5	28.4
PGSC0003DMT400065330	Potato	nucleus	11.13	25.85
KRH33610	Soybean	plastid	8.82	23.33
GSMUA_Achr3P11090_001	Banana	extracellular	20.38	20.91

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	EnsemblPlantsGene:GSMUA_Achr11G02870_001	EnsemblPlants:GSMUA_Achr11P02870_001	EnsemblPlants:GSMUA_Achr11T02870_001
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0RNW7	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF7
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM
UniParc:UPI000295D7FF	SEG:seg	:	:	:	:

Description

Probable polygalacturonase [Source:GMGC_GENE;Acc:GSMUA_Achr11G02870_001]

Coordinates

chr11:+:2055443..2060365

Molecular Weight (calculated)

51942.0 Da

IEP (calculated)

6.341

GRAVY (calculated)

-0.011

Length

476 amino acids

Sequence
(BLAST)

001: MILVLWTVVT AAFIGIAEGH RHHRRAGGAT EVEVFHYAAA GARGCRAHVA SLTDFGGVGD GVTSNTAAFA AAVANLSKVA YDGGAMLVVP AGRWLTGPFN
101: LANHFTLFLD HDAVILATQD INEWPIIDPL PSYGRGRDAA GGRYSNLIMG YNLTDVVITG RNNGTIDGQG ETWWKMFRNK ELNYTRGYLI ELMYCKQVLI
201: SNITLVNSPS WNVHPVYSSH VIVSGITILA PVNSPNTDGI NPDSSSNVRI EDCYIVSGDD CIAIKSGWDE YGIAFNMSSK HIVIRRLTCI SPTSAVIALG
301: SEMSGGIQDV RAEDITAIHS ESGVRIKTTI GRGAYVKDIF VRRMNLHTMK WVFWMTGTYG QHPDDKFDPK AIPVVRNIIY SDVVAENVTM AAKLEGIPGA
401: PFTGICIYNV TAEVVKSKKP IWNCTDVEGV SSHVTPTPCA QIPEYPDRIT HCPFPEDDLP VDYVGLEECS YQRTKP

Best Arabidopsis Sequence Match ( AT3G61490.4 )
(BLAST)

001: MSLFAITSAF SEDNVTAISS NQLIPLNDKI IANLIRSPNT QTKSLNLASS FLHSLSAYKY SYSLLLTSSS NHLASPHSQR AHKSQVILFL SLKHKHTQMY
101: KQTHHFCFQI YKTMKNILAC IVTIITLSNL ITISQGRRVS QSFETFEYTA IICRSHSASI TEYGGVGDGK TLNTKAFQSA VDHLSQYSSE GGAQLFVPAG
201: KWLTGSFNLT SHFTLFLHKD AILLAAQDLN EYPILKALPS YGRGRDAAGG RFASLIFGTN LSDVIITGNN GTIDGQGSFW WQKFHGGKLK YTRPYLIELM
301: FSDTIQISNL TFLDSPSWNI HPVYSSNIIV KGVTIIAPVK SPNTDGINPD SCTNTRIEDC YIISGDDCIA VKSGWDEYGI SFGMPTKHLV IRRLTCISPY
401: SAAIALGSEM SGGIEDVRAE DITAYQTESG VRIKTAVGRG AFVKNIYVKG MNLHTMKWVF WMTGNYKAHA DSHYDPHALP EITGINYRDI VAENVSMAGR
501: LEGISGDPFT GICISNATIS MAAKHKKAIW MCSDVEGVTS GVDPKPCDLL DGQESETTKK KMIDGGCDFP TDVLEIDNVE LKTCSYQMS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS88]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.