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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • plastid 2
  • extracellular 5
  • endoplasmic reticulum 3
  • vacuole 4
  • plasma membrane 3
  • golgi 3
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:plastid, secretory
BaCelLo:plastid
iPSORT:plastid
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY48913 Canola extracellular 96.82 97.03
CDY69951 Canola cytosol 20.76 77.78
PGSC0003DMT400094734 Potato cytosol 16.95 76.19
AT3G61490.4 Thale cress cytosol, plastid 91.95 73.68
PGSC0003DMT400055769 Potato extracellular 73.52 72.75
CDY10898 Canola cytosol 7.84 72.55
Solyc05g049980.2.1 Tomato extracellular 73.52 71.4
Solyc01g094970.2.1 Tomato extracellular 61.23 71.01
KRH48075 Soybean extracellular 71.4 69.92
VIT_15s0046g02000.t01 Wine grape extracellular, vacuole 69.49 68.48
KRH00832 Soybean nucleus 70.13 68.39
KRH40394 Soybean extracellular, nucleus 69.92 68.18
KRH06594 Soybean mitochondrion 70.76 68.02
KRH48076 Soybean extracellular 68.22 67.93
PGSC0003DMT400000538 Potato extracellular 68.01 67.58
CDY70893 Canola cytosol 50.42 66.48
GSMUA_Achr4P05580_001 Banana cytosol 43.22 65.38
CDY69255 Canola cytosol 51.27 64.36
GSMUA_Achr11P... Banana cytosol 40.89 61.86
Os06t0106800-01 Rice extracellular 63.14 61.44
GSMUA_Achr11P... Banana cytosol 39.41 60.98
CDY44105 Canola cytosol, nucleus, plasma membrane 57.84 60.4
EER89047 Sorghum extracellular, vacuole 63.14 60.2
CDY05885 Canola extracellular 58.9 59.91
Zm00001d035899_P001 Maize extracellular 61.44 59.67
TraesCS5A01G513600.1 Wheat extracellular 56.78 59.42
GSMUA_Achr11P... Banana extracellular 59.75 59.24
GSMUA_Achr3P27460_001 Banana extracellular, plastid 25.21 59.2
TraesCS7D01G016300.2 Wheat extracellular 60.38 58.28
CDY08095 Canola extracellular, plasma membrane 60.59 57.78
CDY05907 Canola cytosol 53.39 57.53
CDY20264 Canola extracellular 58.05 57.32
Zm00001d027441_P001 Maize plasma membrane 56.14 57.24
Os03t0124900-01 Rice extracellular 55.51 57.21
CDY39678 Canola extracellular 57.84 57.11
CDY08113 Canola extracellular 54.87 56.8
TraesCS7A01G019900.1 Wheat cytosol 32.2 56.72
EER95599 Sorghum extracellular 55.3 56.37
TraesCS7A01G019500.1 Wheat cytosol 31.78 55.97
TraesCS7A01G019400.1 Wheat extracellular, plastid, vacuole 60.17 54.51
TraesCS4B01G344700.1 Wheat extracellular 55.93 54.32
TraesCSU01G066000.1 Wheat golgi, unclear 60.38 54.18
Zm00001d018548_P001 Maize cytosol 25.0 50.86
CDY10899 Canola cytosol 10.17 50.0
Zm00001d010681_P001 Maize cytosol 29.66 49.47
GSMUA_Achr7P24560_001 Banana cytosol, nucleus, vacuole 17.8 47.73
CDY10897 Canola cytosol, extracellular, peroxisome 23.31 46.03
CDX67875 Canola extracellular, golgi 43.64 44.98
CDY47619 Canola extracellular, vacuole 42.16 44.82
CDY03516 Canola extracellular, vacuole 42.16 44.82
CDY25090 Canola extracellular, golgi 43.22 44.54
CDY13383 Canola extracellular 41.74 44.27
CDY11403 Canola extracellular, plasma membrane 43.01 44.13
CDY10970 Canola extracellular, vacuole 42.16 44.12
CDX94222 Canola extracellular 41.95 43.9
CDX67513 Canola extracellular 41.53 43.85
TraesCS7A01G019700.1 Wheat cytosol 11.23 43.09
CDY54633 Canola extracellular 40.89 43.08
CDX76617 Canola extracellular, plasma membrane 41.74 42.83
CDX92101 Canola extracellular, golgi 41.1 42.64
CDY33922 Canola extracellular 40.04 42.57
CDX82390 Canola extracellular 40.47 42.54
CDX95899 Canola extracellular 40.68 42.38
CDY53228 Canola extracellular 9.96 41.96
CDY46115 Canola extracellular 41.95 41.86
CDX75352 Canola extracellular 41.1 41.1
CDX68976 Canola extracellular 40.47 40.55
CDX72404 Canola extracellular 40.47 40.38
CDY08036 Canola cytosol, nucleus, vacuole 31.78 39.79
CDX74085 Canola cytoskeleton, cytosol, vacuole 31.78 39.47
CDY56436 Canola extracellular, vacuole 39.41 39.24
CDY05643 Canola extracellular, plasma membrane, plastid 39.62 39.12
CDX86247 Canola plasma membrane, plastid 40.04 37.72
CDX71719 Canola mitochondrion 12.71 36.59
CDY27797 Canola extracellular, mitochondrion, plastid 38.14 35.93
CDY41934 Canola extracellular, mitochondrion, plastid 38.14 35.86
CDX96676 Canola extracellular, golgi, plastid 37.92 35.31
CDX83782 Canola extracellular, golgi, plastid 37.92 35.31
Solyc06g030520.1.1 Tomato cytosol 8.26 34.21
PGSC0003DMT400065330 Potato nucleus 12.71 29.27
CDY02392 Canola extracellular, plasma membrane, vacuole 23.31 23.01
CDY12962 Canola extracellular, plasma membrane, vacuole 23.31 23.01
CDY11375 Canola mitochondrion 21.4 19.92
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:A0A078JFX0UniProt:A0A078JFX0EnsemblPlants:CDY65355ProteinID:CDY65355
ProteinID:CDY65355.1GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005975GO:GO:0008150
GO:GO:0008152GO:GO:0016787GO:GO:0016798EnsemblPlantsGene:GSBRNA2T00045683001InterPro:Glyco_hydro_28InterPro:IPR012334
PFAM:PF00295PANTHER:PTHR31339PANTHER:PTHR31339:SF12InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSUPFAM:SSF51126
SignalP:SignalP-noTMUniParc:UPI0004EBAE19SEG:seg:::
Description
BnaC08g49000DBnaC08g49000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFX0]
Coordinates
chrLK034754:+:14685..17890
Molecular Weight (calculated)
51374.0 Da
IEP (calculated)
6.087
GRAVY (calculated)
-0.084
Length
472 amino acids
Sequence
(BLAST)
001: MKNILLCIVT IITLSFLTTN AQGRKVSQSY ETYEYTAITC RSHSASITDF GGVGDGKTLN TKAFQSAVDH LSQYSSDGGA QLFVPAGKWL TGSFSLTSHF
101: TLFLHKDATL LAAQDLEEYP VLKALPSYGR GRDAAGGRFA SLVFGTNLSD VIITGNNGTI DGQGSFWWQK FHGGKLKYTR PYLIELMFSD TIQISNITLI
201: DSPSWNIHPV YSSNILVKGV TIIAPVKSPN TDGINPDSCT NTRIEDCYII SGDDCVAVKS GWDEYGIAFG MPTKHLIIRR LTCVSPYSAA IALGSEMSGG
301: IEDVRAEDIT AYQTESGVRI KTAVGRGAFV RNVYVRGMSL HTMKWVFWMT GNYKAHADSH YDPHALPEIT GINYRDIVAE NVSMAGRLEG ISGDPFTGIC
401: ISNATISMAV KHKKAIWMCS DVEGVTSGVD PKPCDLLDGK QSEKMDGGCE FPSDVLEIDN VELKSCSYQN VT
Best Arabidopsis Sequence Match ( AT3G61490.4 )
(BLAST)
001: MSLFAITSAF SEDNVTAISS NQLIPLNDKI IANLIRSPNT QTKSLNLASS FLHSLSAYKY SYSLLLTSSS NHLASPHSQR AHKSQVILFL SLKHKHTQMY
101: KQTHHFCFQI YKTMKNILAC IVTIITLSNL ITISQGRRVS QSFETFEYTA IICRSHSASI TEYGGVGDGK TLNTKAFQSA VDHLSQYSSE GGAQLFVPAG
201: KWLTGSFNLT SHFTLFLHKD AILLAAQDLN EYPILKALPS YGRGRDAAGG RFASLIFGTN LSDVIITGNN GTIDGQGSFW WQKFHGGKLK YTRPYLIELM
301: FSDTIQISNL TFLDSPSWNI HPVYSSNIIV KGVTIIAPVK SPNTDGINPD SCTNTRIEDC YIISGDDCIA VKSGWDEYGI SFGMPTKHLV IRRLTCISPY
401: SAAIALGSEM SGGIEDVRAE DITAYQTESG VRIKTAVGRG AFVKNIYVKG MNLHTMKWVF WMTGNYKAHA DSHYDPHALP EITGINYRDI VAENVSMAGR
501: LEGISGDPFT GICISNATIS MAAKHKKAIW MCSDVEGVTS GVDPKPCDLL DGQESETTKK KMIDGGCDFP TDVLEIDNVE LKTCSYQMS
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS88]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.