Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75352 | Canola | extracellular | 97.88 | 97.67 |
| Bra011440.1-P | Field mustard | extracellular | 96.6 | 95.99 |
| CDX72404 | Canola | extracellular | 92.36 | 91.97 |
| CDY46115 | Canola | extracellular | 92.14 | 91.75 |
| AT4G33440.1 | Thale cress | extracellular | 88.96 | 88.21 |
| KRH53903 | Soybean | extracellular, plasma membrane, plastid | 67.3 | 66.46 |
| VIT_04s0044g01420.t01 | Wine grape | extracellular, golgi, vacuole | 69.85 | 63.64 |
| Solyc06g060170.2.1 | Tomato | cytosol, golgi, plasma membrane | 65.82 | 63.52 |
| PGSC0003DMT400030711 | Potato | extracellular, golgi, nucleus | 65.39 | 63.37 |
| GSMUA_Achr2P08050_001 | Banana | cytosol, extracellular, golgi, mitochondrion | 58.17 | 61.99 |
| TraesCS7D01G320900.1 | Wheat | plastid | 61.78 | 60.0 |
| TraesCS7A01G323800.3 | Wheat | plastid | 61.57 | 59.79 |
| Os08t0107300-00 | Rice | extracellular, mitochondrion | 60.72 | 59.34 |
| TraesCS7B01G224700.1 | Wheat | plastid | 60.72 | 58.97 |
| KXG24195 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane, plastid | 61.78 | 58.55 |
| Zm00001d034990_P001 | Maize | plasma membrane | 60.08 | 57.4 |
| CDY69951 | Canola | cytosol | 14.86 | 55.56 |
| Zm00001d021964_P001 | Maize | cytosol | 18.68 | 52.38 |
| CDY13383 | Canola | extracellular | 48.41 | 51.24 |
| CDY47619 | Canola | extracellular, vacuole | 48.2 | 51.13 |
| CDX67513 | Canola | extracellular | 48.41 | 51.01 |
| CDY03516 | Canola | extracellular, vacuole | 47.98 | 50.9 |
| HORVU7Hr1G077560.12 | Barley | plastid | 51.17 | 49.9 |
| CDX94222 | Canola | extracellular | 47.77 | 49.89 |
| CDY10970 | Canola | extracellular, vacuole | 47.35 | 49.45 |
| CDY25090 | Canola | extracellular, golgi | 45.86 | 47.16 |
| CDY11403 | Canola | extracellular, plasma membrane | 45.86 | 46.96 |
| CDX67875 | Canola | extracellular, golgi | 45.65 | 46.94 |
| CDX76617 | Canola | extracellular, plasma membrane | 45.65 | 46.74 |
| CDY53228 | Canola | extracellular | 11.04 | 46.43 |
| CDX92101 | Canola | extracellular, golgi | 43.31 | 44.84 |
| CDY70893 | Canola | cytosol | 33.97 | 44.69 |
| CDX95899 | Canola | extracellular | 42.68 | 44.37 |
| CDY08036 | Canola | cytosol, nucleus, vacuole | 35.24 | 44.03 |
| CDX74085 | Canola | cytoskeleton, cytosol, vacuole | 35.46 | 43.95 |
| CDY69255 | Canola | cytosol | 34.61 | 43.35 |
| CDX82390 | Canola | extracellular | 41.19 | 43.21 |
| CDY54633 | Canola | extracellular | 40.98 | 43.08 |
| CDY05885 | Canola | extracellular | 42.25 | 42.89 |
| CDY05907 | Canola | cytosol | 39.49 | 42.47 |
| CDY44105 | Canola | cytosol, nucleus, plasma membrane | 40.55 | 42.26 |
| CDY33922 | Canola | extracellular | 39.7 | 42.12 |
| CDX96676 | Canola | extracellular, golgi, plastid | 44.37 | 41.22 |
| CDX83782 | Canola | extracellular, golgi, plastid | 44.16 | 41.03 |
| CDY08113 | Canola | extracellular | 39.7 | 41.01 |
| CDY08095 | Canola | extracellular, plasma membrane | 42.89 | 40.81 |
| CDY65355 | Canola | extracellular | 40.55 | 40.47 |
| CDY56436 | Canola | extracellular, vacuole | 40.34 | 40.08 |
| CDY48913 | Canola | extracellular | 39.92 | 39.92 |
| CDY05643 | Canola | extracellular, plasma membrane, plastid | 40.34 | 39.75 |
| CDY10897 | Canola | cytosol, extracellular, peroxisome | 20.17 | 39.75 |
| CDY39678 | Canola | extracellular | 39.49 | 38.91 |
| CDY20264 | Canola | extracellular | 39.49 | 38.91 |
| CDY27797 | Canola | extracellular, mitochondrion, plastid | 40.76 | 38.32 |
| CDY41934 | Canola | extracellular, mitochondrion, plastid | 40.76 | 38.25 |
| CDX86247 | Canola | plasma membrane, plastid | 39.7 | 37.33 |
| CDY10898 | Canola | cytosol | 4.03 | 37.25 |
| CDX71719 | Canola | mitochondrion | 12.53 | 35.98 |
| CDY10899 | Canola | cytosol | 5.1 | 25.0 |
| CDY02392 | Canola | extracellular, plasma membrane, vacuole | 22.93 | 22.59 |
| CDY12962 | Canola | extracellular, plasma membrane, vacuole | 22.51 | 22.18 |
| CDY11375 | Canola | mitochondrion | 19.75 | 18.34 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | GO:A0A078BVZ2 | EnsemblPlants:CDX68976 | ProteinID:CDX68976 | ProteinID:CDX68976.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0071555 | EnsemblPlantsGene:GSBRNA2T00130725001 | InterPro:Glyco_hydro_28 |
| InterPro:IPR012334 | PFAM:PF00295 | PANTHER:PTHR31339 | PANTHER:PTHR31339:SF4 | InterPro:PbH1 | InterPro:Pectin_lyas_fold |
| InterPro:Pectin_lyase_fold/virulence | SMART:SM00710 | SUPFAM:SSF51126 | TMHMM:TMhelix | UniParc:UPI0004EB5F42 | SEG:seg |
Description
BnaC01g04770D
Coordinates
chrLK031789:+:2267521..2270327
Molecular Weight (calculated)
51514.8 Da
IEP (calculated)
6.936
GRAVY (calculated)
-0.070
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: MESEKPSVVS SITRPSWVLL LLAFTVLAIL SHQISSRSFL PLFIPTTAIH DPVTCSGFFN HDPSPKRIVM SLTEFGGVGD GKTSNTEAFR RAVANLKGFA
101: AEGGAQLNVP KGTWLSGSFN LTSNFTLFLE QGAVILGSQD PEEWPIIEPL PSYGRGRERP GGRHISLIHG DNLTNVVITG ENGTIDGQGK MWWELWWNRT
201: LVHTRGHLIE IKNSHNILIS NLTLLNSPFW TVHPVYCSNV VIRDMTILAP MNAPNTDGID PDSSTNVCIE DCYIESGDDL VAVKSGWDQY GMAMARPSSN
301: IIIRRISGTT RTCSGVGIGS EMSGGIFNIT IQDIHVWDSA AGLRIKTDVG RGGYISNITI SNVLLEKVKV PIRFSRGSND HPDDKWDPKA MPRVKGIYIS
401: NVVSVDSRKA PMLLGVEGGT FQDVCLRNVT LLGLPHTEKW KCKDVSGYAS DVFPLSCPQL LQKEGLVSQC L
101: AEGGAQLNVP KGTWLSGSFN LTSNFTLFLE QGAVILGSQD PEEWPIIEPL PSYGRGRERP GGRHISLIHG DNLTNVVITG ENGTIDGQGK MWWELWWNRT
201: LVHTRGHLIE IKNSHNILIS NLTLLNSPFW TVHPVYCSNV VIRDMTILAP MNAPNTDGID PDSSTNVCIE DCYIESGDDL VAVKSGWDQY GMAMARPSSN
301: IIIRRISGTT RTCSGVGIGS EMSGGIFNIT IQDIHVWDSA AGLRIKTDVG RGGYISNITI SNVLLEKVKV PIRFSRGSND HPDDKWDPKA MPRVKGIYIS
401: NVVSVDSRKA PMLLGVEGGT FQDVCLRNVT LLGLPHTEKW KCKDVSGYAS DVFPLSCPQL LQKEGLVSQC L
001: MEPEKNPTTV LSAITRPSWA FLLLVFTVLA ILSLQISSNS FLPLWIPTSQ YDDPVTCSGF FNHDPFPNRI VMSITDFGGV GDGKTSNTAA FRRAVRHLEG
101: FAAEGGAQLN VPEGTWLSGS FNLTSNFTLF LERGALILGS KDLDEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI TGENGTIDGQ GKMWWELWWN
201: RTLVHTRGHL IELKNSHNIL ISNLTLLNSP FWTIHPVYCS NVVIRNMTIL APMNAPNTDG IDPDSSTNVC IEDCYIESGD DLVAVKSGWD QYGMAVARPS
301: SNIVIRRISG TTRTCSGVGI GSEMSGGIFN ITVEDIHVWD SAAGLRIKTD KGRGGYISNI TFNNVLLEKV KVPIRFSSGS NDHSDDKWDP KALPRVKGIY
401: ISNVVSLNSR KAPMLLGVEG TSFQDVCLRN VTLLGLPKTE KWKCKDVSGY ASDVFPLSCP QLLQKKGSIA QCSYR
101: FAAEGGAQLN VPEGTWLSGS FNLTSNFTLF LERGALILGS KDLDEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI TGENGTIDGQ GKMWWELWWN
201: RTLVHTRGHL IELKNSHNIL ISNLTLLNSP FWTIHPVYCS NVVIRNMTIL APMNAPNTDG IDPDSSTNVC IEDCYIESGD DLVAVKSGWD QYGMAVARPS
301: SNIVIRRISG TTRTCSGVGI GSEMSGGIFN ITVEDIHVWD SAAGLRIKTD KGRGGYISNI TFNNVLLEKV KVPIRFSSGS NDHSDDKWDP KALPRVKGIY
401: ISNVVSLNSR KAPMLLGVEG TSFQDVCLRN VTLLGLPKTE KWKCKDVSGY ASDVFPLSCP QLLQKKGSIA QCSYR
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84K13]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.