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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 6
  • plasma membrane 5
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:vacuole
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY10970 Canola extracellular, vacuole 98.0 98.0
CDY03516 Canola extracellular, vacuole 89.14 90.54
CDY47619 Canola extracellular, vacuole 88.69 90.09
AT4G23820.1 Thale cress extracellular, vacuole 88.03 89.41
KRG99037 Soybean nucleus 72.06 73.53
KRH45957 Soybean extracellular 71.18 72.46
VIT_02s0025g01330.t01 Wine grape extracellular 70.51 71.14
GSMUA_Achr10P... Banana cytosol 64.3 70.39
PGSC0003DMT400031687 Potato extracellular 68.96 69.57
KRH14547 Soybean extracellular 68.74 69.51
GSMUA_Achr8P19900_001 Banana cytosol 63.86 69.4
KRH73576 Soybean extracellular 41.46 67.75
GSMUA_Achr6P14280_001 Banana cytosol 59.2 66.42
GSMUA_Achr4P08470_001 Banana extracellular 60.09 65.94
Solyc08g082170.2.1 Tomato nucleus 68.07 65.74
CDX67513 Canola extracellular 64.3 64.88
CDY13383 Canola extracellular 63.86 64.72
Os01t0618900-01 Rice cytosol, extracellular 46.34 63.53
Os02t0256100-01 Rice extracellular 62.31 63.43
EES04867 Sorghum extracellular, plasma membrane 61.86 62.28
GSMUA_Achr4P15650_001 Banana extracellular, plasma membrane, vacuole 55.88 62.07
TraesCS3B01G253000.1 Wheat extracellular 61.42 61.56
Zm00001d053395_P001 Maize extracellular 61.2 61.2
EES20030 Sorghum extracellular 58.98 60.59
TraesCS3D01G230000.1 Wheat extracellular 60.31 60.44
Os05t0587000-01 Rice extracellular 59.2 59.6
EES01085 Sorghum extracellular 57.87 58.39
Zm00001d009717_P001 Maize extracellular 57.43 58.07
Zm00001d011369_P001 Maize extracellular 53.44 54.16
CDY69951 Canola cytosol 15.08 53.97
HORVU3Hr1G054810.4 Barley extracellular 60.53 50.46
CDX75352 Canola extracellular 50.11 47.88
CDY46115 Canola extracellular 50.11 47.78
CDX68976 Canola extracellular 49.89 47.77
CDX72404 Canola extracellular 49.89 47.57
CDY08036 Canola cytosol, nucleus, vacuole 38.8 46.42
CDY25090 Canola extracellular, golgi 46.56 45.85
CDX74085 Canola cytoskeleton, cytosol, vacuole 38.58 45.79
CDX67875 Canola extracellular, golgi 46.34 45.63
CDX95899 Canola extracellular 45.68 45.47
CDX92101 Canola extracellular, golgi 45.68 45.27
CDX82390 Canola extracellular 44.35 44.54
CDY54633 Canola extracellular 44.12 44.42
CDY11403 Canola extracellular, plasma membrane 45.23 44.35
CDY70893 Canola cytosol 34.81 43.85
CDX76617 Canola extracellular, plasma membrane 44.57 43.7
CDY33922 Canola extracellular 43.02 43.69
CDY05907 Canola cytosol 42.35 43.61
CDY05885 Canola extracellular 44.35 43.1
CDY69255 Canola cytosol 35.26 42.29
CDY53228 Canola extracellular 10.42 41.96
CDY65355 Canola extracellular 43.9 41.95
CDY08113 Canola extracellular 42.13 41.67
CDY10897 Canola cytosol, extracellular, peroxisome 21.95 41.42
CDY48913 Canola extracellular 43.24 41.4
CDY10898 Canola cytosol 4.66 41.18
CDY56436 Canola extracellular, vacuole 42.79 40.72
CDY05643 Canola extracellular, plasma membrane, plastid 42.79 40.38
CDY44105 Canola cytosol, nucleus, plasma membrane 40.35 40.27
CDY08095 Canola extracellular, plasma membrane 44.12 40.2
CDY20264 Canola extracellular 42.35 39.96
CDY39678 Canola extracellular 42.13 39.75
CDY27797 Canola extracellular, mitochondrion, plastid 43.24 38.92
CDX83782 Canola extracellular, golgi, plastid 43.46 38.66
CDX96676 Canola extracellular, golgi, plastid 43.46 38.66
CDY41934 Canola extracellular, mitochondrion, plastid 43.02 38.65
CDX86247 Canola plasma membrane, plastid 42.79 38.52
CDX71719 Canola mitochondrion 13.3 36.59
CDY10899 Canola cytosol 4.88 22.92
CDY02392 Canola extracellular, plasma membrane, vacuole 23.95 22.59
CDY12962 Canola extracellular, plasma membrane, vacuole 23.73 22.38
CDY11375 Canola mitochondrion 22.39 19.92
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:A0A078DZ73EnsemblPlants:CDX94222ProteinID:CDX94222ProteinID:CDX94222.1
GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016043GO:GO:0016787GO:GO:0071555EnsemblPlantsGene:GSBRNA2T00157169001InterPro:Glyco_hydro_28
InterPro:IPR012334PFAM:PF00295PANTHER:PTHR31339PANTHER:PTHR31339:SF3InterPro:PbH1InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulenceSMART:SM00710SUPFAM:SSF51126SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0001B63BAC
SEG:seg:::::
Description
BnaC07g38560D
Coordinates
chrLK031879:-:1421832..1425141
Molecular Weight (calculated)
49070.4 Da
IEP (calculated)
8.523
GRAVY (calculated)
-0.049
Length
451 amino acids
Sequence
(BLAST)
001: MWPLSISVVF LPCFAAFLLT ALSSAYGYGD SEATCSGIVP LKYRNDKISI TDFGGVGDGR TVNTKAFRAA IYRIQHLRRR GGTVLYIPPG VFLTESFSLT
101: SHMTLFLARG AVIKAVQDTW NWPLIDPLPS YGRGRELPGA RYISFIHGDG LRDVVITGQN GTIDGQGEVW WNMWRSRTLK FTRPNLIEFK NSKAIIISNV
201: IFQNSPFWNI HPVYCSDVVI HHVTILAPQD SPNTDGIDPD SSNNVCIEDS YISTGDDLVA IKSGWDEYGI AFGRPSSNIT IRRITGSSPY AGIAIGSETS
301: GGIKNIVAEH ISLSNMGVGV NIKTNIGRGG YIKNIKISNV YVENAKYGIK IAGDTGDHPD AFYNPNALPI VKGIHINNVW GVNVQNAGSI QGLKGSPFTG
401: ICLSEINLHG SLNSYRTWKC SDVIGTSLKV SPWPCSELRT TGGSYSCSST F
Best Arabidopsis Sequence Match ( AT4G23820.1 )
(BLAST)
001: MWRLSVSIFL FSCLFVSSSS LGDSEATCSG IVPLRYRYDK ISITDFGGVG DGRTVNTKAF RAAIYRIQHL KRRGGTLLYI PPGVYLTESF NLTSHMTLYL
101: AKGAVIRAVQ DTWNWPLIDP LPSYGRGREL PGGRYMSFIH GDGLRDVVIT GQNGTIDGQG EVWWNMWRSR TLKYTRPNLI EFKDSKEIII SNVIFQNSPF
201: WNIHPVYCSN VVIHHVTILA PQDSPNTDGI DPDSSYNVCI EDSYISTGDD LVAIKSGWDQ YGIAYGRPSS NITIRRITGS SPFAGIAIGS ETSGGIKNII
301: AEHITLSNMG VGVNIKTNIG RGGYIKNIKI SDVYVDTAKY GIKIAGDTGD HPDENYNPNA LPVVKGIHIK NVWGVNVRNA GSIQGLKGSP FTGICLSEIN
401: LHGSLNSYKT WKCSDVSGTS LKVSPWPCSE LRTTGGSNLC SSTF
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SUP5]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.